Hb_003767_010

Information

Type -
Description -
Location Contig3767: 74138-76564
Sequence    

Annotation

kegg
ID rcu:RCOM_0076880
description ARF GTPase activator, putative
nr
ID XP_012077788.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
swissprot
ID Q8L7A4
description Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1
trembl
ID A0A067KDT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13428 PE=4 SV=1
Gene Ontology
ID GO:0004609
description probable adp-ribosylation factor gtpase-activating protein agd11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38385: 73942-76558
cDNA
(Sanger)
(ID:Location)		 039_J13.ab1: 73942-76340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003767_010 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
2 Hb_000377_160 0.0760108438 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
3 Hb_000649_280 0.0981388544 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
4 Hb_029866_110 0.0981964018 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
5 Hb_002217_200 0.1009884076 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
6 Hb_123560_050 0.101347629 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
7 Hb_109489_010 0.1026227397 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
8 Hb_000917_120 0.1120388775 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000597_080 0.11525222 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
10 Hb_005470_040 0.1180236902 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
11 Hb_003212_010 0.1199790911 - - sucrose transporter 4 [Hevea brasiliensis]
12 Hb_031949_010 0.1205416985 - - -
13 Hb_009659_040 0.1218546693 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
14 Hb_001819_010 0.1236880075 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
15 Hb_000264_340 0.1242362352 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
16 Hb_170878_050 0.1250557447 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
17 Hb_001675_130 0.1259745937 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
18 Hb_000059_080 0.1274082402 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
19 Hb_007320_020 0.130495027 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
20 Hb_007919_030 0.132130848 - - -

Gene co-expression network

sample Hb_003767_010 Hb_003767_010 Hb_000377_160 Hb_000377_160 Hb_003767_010--Hb_000377_160 Hb_000649_280 Hb_000649_280 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_109489_010 Hb_109489_010 Hb_003767_010--Hb_109489_010 Hb_000377_160--Hb_000649_280 Hb_000377_160--Hb_123560_050 Hb_005470_040 Hb_005470_040 Hb_000377_160--Hb_005470_040 Hb_000563_120 Hb_000563_120 Hb_000377_160--Hb_000563_120 Hb_031949_010 Hb_031949_010 Hb_000377_160--Hb_031949_010 Hb_000649_280--Hb_000563_120 Hb_007420_010 Hb_007420_010 Hb_000649_280--Hb_007420_010 Hb_001907_020 Hb_001907_020 Hb_000649_280--Hb_001907_020 Hb_000649_280--Hb_123560_050 Hb_170878_050 Hb_170878_050 Hb_029866_110--Hb_170878_050 Hb_001660_050 Hb_001660_050 Hb_029866_110--Hb_001660_050 Hb_029866_110--Hb_123560_050 Hb_016637_020 Hb_016637_020 Hb_029866_110--Hb_016637_020 Hb_009659_040 Hb_009659_040 Hb_029866_110--Hb_009659_040 Hb_001819_010 Hb_001819_010 Hb_029866_110--Hb_001819_010 Hb_007919_030 Hb_007919_030 Hb_002217_200--Hb_007919_030 Hb_002217_200--Hb_029866_110 Hb_002217_200--Hb_109489_010 Hb_002217_200--Hb_001819_010 Hb_002217_200--Hb_000377_160 Hb_123560_050--Hb_001819_010 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_109489_010--Hb_005470_040 Hb_000264_340 Hb_000264_340 Hb_109489_010--Hb_000264_340 Hb_109489_010--Hb_123560_050 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 45.3129 11.11 14.6259 0 0.072924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310057 0.182821 0 53.8828 42.7047

CAGE analysis