Hb_002217_200

Information

Type -
Description -
Location Contig2217: 223125-225963
Sequence    

Annotation

kegg
ID rcu:RCOM_1002050
description gibberellin 2-oxidase, putative (EC:1.14.11.23)
nr
ID XP_012084136.1
description PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
swissprot
ID Q9XHM5
description Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1
trembl
ID A0A067JVQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19047 PE=3 SV=1
Gene Ontology
ID GO:0016706
description gibberellin 2-beta-dioxygenase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_200 0.0 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
2 Hb_003767_010 0.1009884076 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
3 Hb_007919_030 0.120390992 - - -
4 Hb_029866_110 0.1227834334 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
5 Hb_109489_010 0.1228350553 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
6 Hb_001819_010 0.1242963977 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
7 Hb_000377_160 0.1272095906 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
8 Hb_123560_050 0.1298592881 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
9 Hb_009659_040 0.1313362409 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
10 Hb_043768_010 0.1320051658 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
11 Hb_001085_230 0.1324537535 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
12 Hb_000264_340 0.1372702637 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
13 Hb_082683_010 0.1373011155 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_170878_050 0.1392246227 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
15 Hb_000917_120 0.1435834534 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001675_130 0.1451091312 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
17 Hb_005470_040 0.148924782 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
18 Hb_000649_280 0.1517097091 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
19 Hb_029576_080 0.1521797857 - - Aspartic proteinase precursor, putative [Ricinus communis]
20 Hb_003212_010 0.1522334339 - - sucrose transporter 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002217_200 Hb_002217_200 Hb_003767_010 Hb_003767_010 Hb_002217_200--Hb_003767_010 Hb_007919_030 Hb_007919_030 Hb_002217_200--Hb_007919_030 Hb_029866_110 Hb_029866_110 Hb_002217_200--Hb_029866_110 Hb_109489_010 Hb_109489_010 Hb_002217_200--Hb_109489_010 Hb_001819_010 Hb_001819_010 Hb_002217_200--Hb_001819_010 Hb_000377_160 Hb_000377_160 Hb_002217_200--Hb_000377_160 Hb_003767_010--Hb_000377_160 Hb_000649_280 Hb_000649_280 Hb_003767_010--Hb_000649_280 Hb_003767_010--Hb_029866_110 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_003767_010--Hb_109489_010 Hb_000163_250 Hb_000163_250 Hb_007919_030--Hb_000163_250 Hb_001675_130 Hb_001675_130 Hb_007919_030--Hb_001675_130 Hb_001085_230 Hb_001085_230 Hb_007919_030--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_007919_030--Hb_001946_060 Hb_007919_030--Hb_001819_010 Hb_170878_050 Hb_170878_050 Hb_029866_110--Hb_170878_050 Hb_001660_050 Hb_001660_050 Hb_029866_110--Hb_001660_050 Hb_029866_110--Hb_123560_050 Hb_016637_020 Hb_016637_020 Hb_029866_110--Hb_016637_020 Hb_009659_040 Hb_009659_040 Hb_029866_110--Hb_009659_040 Hb_029866_110--Hb_001819_010 Hb_005470_040 Hb_005470_040 Hb_109489_010--Hb_005470_040 Hb_000264_340 Hb_000264_340 Hb_109489_010--Hb_000264_340 Hb_109489_010--Hb_123560_050 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220 Hb_001819_010--Hb_123560_050 Hb_006788_100 Hb_006788_100 Hb_001819_010--Hb_006788_100 Hb_001819_010--Hb_170878_050 Hb_000191_100 Hb_000191_100 Hb_001819_010--Hb_000191_100 Hb_001819_010--Hb_009659_040 Hb_000377_160--Hb_000649_280 Hb_000377_160--Hb_123560_050 Hb_000377_160--Hb_005470_040 Hb_000563_120 Hb_000563_120 Hb_000377_160--Hb_000563_120 Hb_031949_010 Hb_031949_010 Hb_000377_160--Hb_031949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0371371 1.66298 0.581147 0.632218 0.0186182 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.084864 0.0333768 0 2.15417 1.58533

CAGE analysis