Hb_001946_060

Information

Type -
Description -
Location Contig1946: 47899-53471
Sequence    

Annotation

kegg
ID rcu:RCOM_0224110
description hypothetical protein
nr
ID XP_012078790.1
description PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
swissprot
ID Q9NVG8
description TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
trembl
ID B9SET2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19390: 48377-53260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_060 0.0 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
2 Hb_000163_250 0.1163951437 - - unnamed protein product [Vitis vinifera]
3 Hb_001085_230 0.1195290059 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
4 Hb_007919_030 0.1198158705 - - -
5 Hb_000037_010 0.1249672377 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
6 Hb_000808_220 0.1274681325 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
7 Hb_002518_270 0.1337517352 - - glycogen phosphorylase, putative [Ricinus communis]
8 Hb_003337_050 0.138283258 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
9 Hb_009803_030 0.1420661234 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
10 Hb_033045_010 0.1473024374 - - copine, putative [Ricinus communis]
11 Hb_001538_050 0.1491090898 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
12 Hb_007420_010 0.1536804199 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
13 Hb_107543_010 0.1540083297 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
14 Hb_000008_080 0.1543447584 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002078_240 0.1582393405 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
16 Hb_000819_010 0.1594929273 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
17 Hb_000501_040 0.1609027376 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000563_120 0.161340703 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
19 Hb_001921_010 0.1636577625 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_001675_130 0.1644377505 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_060 Hb_001946_060 Hb_000163_250 Hb_000163_250 Hb_001946_060--Hb_000163_250 Hb_001085_230 Hb_001085_230 Hb_001946_060--Hb_001085_230 Hb_007919_030 Hb_007919_030 Hb_001946_060--Hb_007919_030 Hb_000037_010 Hb_000037_010 Hb_001946_060--Hb_000037_010 Hb_000808_220 Hb_000808_220 Hb_001946_060--Hb_000808_220 Hb_002518_270 Hb_002518_270 Hb_001946_060--Hb_002518_270 Hb_000163_250--Hb_007919_030 Hb_000008_080 Hb_000008_080 Hb_000163_250--Hb_000008_080 Hb_008783_020 Hb_008783_020 Hb_000163_250--Hb_008783_020 Hb_000163_250--Hb_000037_010 Hb_005276_220 Hb_005276_220 Hb_000163_250--Hb_005276_220 Hb_006788_100 Hb_006788_100 Hb_000163_250--Hb_006788_100 Hb_001085_230--Hb_000037_010 Hb_001819_010 Hb_001819_010 Hb_001085_230--Hb_001819_010 Hb_123560_050 Hb_123560_050 Hb_001085_230--Hb_123560_050 Hb_000563_120 Hb_000563_120 Hb_001085_230--Hb_000563_120 Hb_001085_230--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_001085_230--Hb_000377_160 Hb_001675_130 Hb_001675_130 Hb_007919_030--Hb_001675_130 Hb_002217_200 Hb_002217_200 Hb_007919_030--Hb_002217_200 Hb_007919_030--Hb_001819_010 Hb_009803_030 Hb_009803_030 Hb_000037_010--Hb_009803_030 Hb_046101_010 Hb_046101_010 Hb_000037_010--Hb_046101_010 Hb_114310_050 Hb_114310_050 Hb_000037_010--Hb_114310_050 Hb_023344_130 Hb_023344_130 Hb_000037_010--Hb_023344_130 Hb_000808_220--Hb_001085_230 Hb_109489_010 Hb_109489_010 Hb_000808_220--Hb_109489_010 Hb_000808_220--Hb_001675_130 Hb_000808_220--Hb_007919_030 Hb_000808_220--Hb_000377_160 Hb_006970_150 Hb_006970_150 Hb_002518_270--Hb_006970_150 Hb_006501_170 Hb_006501_170 Hb_002518_270--Hb_006501_170 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_002518_270--Hb_033045_010 Hb_008948_080 Hb_008948_080 Hb_002518_270--Hb_008948_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.295569 24.5342 9.09762 4.05125 1.29139 0.511576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.056359 0.0443411 0.04179 16.1759 10.7059

CAGE analysis