Hb_006501_170

Information

Type -
Description -
Location Contig6501: 164456-167536
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09540g
description POPTRDRAFT_779386; hypothetical protein
nr
ID KDP33800.1
description hypothetical protein JCGZ_07371 [Jatropha curcas]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID A0A067KNE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07371 PE=3 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52546: 164779-165497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_170 0.0 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
2 Hb_002518_270 0.1233667244 - - glycogen phosphorylase, putative [Ricinus communis]
3 Hb_003106_210 0.1314966131 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
4 Hb_004218_160 0.138564324 - - NBS-LRR type disease resistance protein [Medicago truncatula]
5 Hb_008948_080 0.1394235842 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
6 Hb_003371_140 0.1408588448 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
7 Hb_011214_140 0.1490086262 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000067_030 0.1522810856 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
9 Hb_003142_090 0.1541788712 - - Kinase, putative isoform 2 [Theobroma cacao]
10 Hb_067034_030 0.1562909752 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_006718_040 0.1590317217 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_001195_730 0.1591323044 - - PREDICTED: protein LYK5-like [Jatropha curcas]
13 Hb_001365_050 0.1688595731 - - hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]
14 Hb_002218_070 0.1713269892 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
15 Hb_000668_160 0.1778880418 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_001825_020 0.1789378535 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000977_090 0.1797687374 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
18 Hb_000343_260 0.180423377 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
19 Hb_005736_070 0.1817488733 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
20 Hb_000521_300 0.1836109214 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]

Gene co-expression network

sample Hb_006501_170 Hb_006501_170 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_006970_150 Hb_006970_150 Hb_002518_270--Hb_006970_150 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_002518_270--Hb_033045_010 Hb_002518_270--Hb_008948_080 Hb_001946_060 Hb_001946_060 Hb_002518_270--Hb_001946_060 Hb_001365_050 Hb_001365_050 Hb_003106_210--Hb_001365_050 Hb_006316_030 Hb_006316_030 Hb_003106_210--Hb_006316_030 Hb_002218_070 Hb_002218_070 Hb_003106_210--Hb_002218_070 Hb_000067_030 Hb_000067_030 Hb_003106_210--Hb_000067_030 Hb_107543_010 Hb_107543_010 Hb_003106_210--Hb_107543_010 Hb_000085_230 Hb_000085_230 Hb_004218_160--Hb_000085_230 Hb_002660_040 Hb_002660_040 Hb_004218_160--Hb_002660_040 Hb_004007_120 Hb_004007_120 Hb_004218_160--Hb_004007_120 Hb_000527_140 Hb_000527_140 Hb_004218_160--Hb_000527_140 Hb_000120_070 Hb_000120_070 Hb_004218_160--Hb_000120_070 Hb_000977_090 Hb_000977_090 Hb_004218_160--Hb_000977_090 Hb_008948_080--Hb_006970_150 Hb_000723_120 Hb_000723_120 Hb_008948_080--Hb_000723_120 Hb_008948_080--Hb_000120_070 Hb_004459_110 Hb_004459_110 Hb_008948_080--Hb_004459_110 Hb_001863_450 Hb_001863_450 Hb_003371_140--Hb_001863_450 Hb_126103_010 Hb_126103_010 Hb_003371_140--Hb_126103_010 Hb_000589_220 Hb_000589_220 Hb_003371_140--Hb_000589_220 Hb_004466_070 Hb_004466_070 Hb_003371_140--Hb_004466_070 Hb_003142_090 Hb_003142_090 Hb_003371_140--Hb_003142_090 Hb_001009_110 Hb_001009_110 Hb_011214_140--Hb_001009_110 Hb_000030_260 Hb_000030_260 Hb_011214_140--Hb_000030_260 Hb_000343_260 Hb_000343_260 Hb_011214_140--Hb_000343_260 Hb_000521_300 Hb_000521_300 Hb_011214_140--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_011214_140--Hb_000086_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0413144 5.37056 0.819388 0.631883 0.0537459 0.0728019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231523 0.273286 0.217832 2.89495 0.996144

CAGE analysis