Hb_000977_090

Information

Type -
Description -
Location Contig977: 61329-63294
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18550g
description POPTRDRAFT_770116; hypothetical protein
nr
ID XP_002315108.2
description hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID B9HYF7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18550g PE=4 SV=2
Gene Ontology
ID GO:0005622
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64148: 61663-62141 , PASA_asmbl_64149: 62180-62505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_090 0.0 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
2 Hb_004007_120 0.0986480598 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
3 Hb_003556_070 0.1091578931 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_000120_070 0.1213842513 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
5 Hb_052764_080 0.1215556985 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
6 Hb_073119_010 0.1313134002 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
7 Hb_002324_050 0.1340460422 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
8 Hb_068332_010 0.136472679 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_004218_160 0.1372396042 - - NBS-LRR type disease resistance protein [Medicago truncatula]
10 Hb_005649_010 0.1401574613 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
11 Hb_010174_190 0.141255316 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
12 Hb_000720_210 0.1446510565 - - carbonyl reductase, putative [Ricinus communis]
13 Hb_168068_010 0.1451038854 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_050236_010 0.1482248656 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
15 Hb_000280_110 0.1494343185 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_000771_030 0.1499514478 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_002343_020 0.1499590821 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
18 Hb_002600_010 0.1503349185 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
19 Hb_000094_010 0.150881064 - - lrr receptor protein kinase, putative [Ricinus communis]
20 Hb_007894_030 0.1540936613 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000977_090 Hb_000977_090 Hb_004007_120 Hb_004007_120 Hb_000977_090--Hb_004007_120 Hb_003556_070 Hb_003556_070 Hb_000977_090--Hb_003556_070 Hb_000120_070 Hb_000120_070 Hb_000977_090--Hb_000120_070 Hb_052764_080 Hb_052764_080 Hb_000977_090--Hb_052764_080 Hb_073119_010 Hb_073119_010 Hb_000977_090--Hb_073119_010 Hb_002324_050 Hb_002324_050 Hb_000977_090--Hb_002324_050 Hb_004007_120--Hb_000120_070 Hb_000914_130 Hb_000914_130 Hb_004007_120--Hb_000914_130 Hb_004218_160 Hb_004218_160 Hb_004007_120--Hb_004218_160 Hb_004007_120--Hb_003556_070 Hb_005649_010 Hb_005649_010 Hb_004007_120--Hb_005649_010 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_017604_020 Hb_017604_020 Hb_003556_070--Hb_017604_020 Hb_003556_070--Hb_000120_070 Hb_000280_110 Hb_000280_110 Hb_003556_070--Hb_000280_110 Hb_000836_390 Hb_000836_390 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000075_110 Hb_000075_110 Hb_000120_070--Hb_000075_110 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_073171_010 Hb_073171_010 Hb_052764_080--Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_052764_080--Hb_001259_100 Hb_005183_200 Hb_005183_200 Hb_052764_080--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_073119_010--Hb_000098_250 Hb_000819_010 Hb_000819_010 Hb_073119_010--Hb_000819_010 Hb_000094_010 Hb_000094_010 Hb_073119_010--Hb_000094_010 Hb_073119_010--Hb_017604_020 Hb_000003_420 Hb_000003_420 Hb_073119_010--Hb_000003_420 Hb_003656_170 Hb_003656_170 Hb_002324_050--Hb_003656_170 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_003964_010 Hb_003964_010 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20771 15.9911 4.7161 6.4697 0.0873015 0.122551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.607674 0.588468 0.557478 8.14542 2.21315

CAGE analysis