Hb_002324_040

Information

Type -
Description -
Location Contig2324: 30104-32431
Sequence    

Annotation

kegg
ID rcu:RCOM_1131700
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_012081753.1
description PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
swissprot
ID O49607
description Subtilisin-like protease SBT1.6 OS=Arabidopsis thaliana GN=SBT1.6 PE=2 SV=1
trembl
ID A0A067K090
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18798 PE=4 SV=1
Gene Ontology
ID GO:0016020
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002324_040 0.0 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
2 Hb_003025_150 0.0569056965 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012727_010 0.0803141856 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_002324_050 0.1013814817 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
5 Hb_003579_040 0.1049305887 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
6 Hb_064047_010 0.1176494957 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004032_250 0.1214013917 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001071_060 0.136663666 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
9 Hb_007625_030 0.1372738147 - - unknown [Medicago truncatula]
10 Hb_000540_040 0.1396791577 - - PREDICTED: chitinase 2 [Amborella trichopoda]
11 Hb_002431_090 0.1400345181 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003656_170 0.1406707346 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
13 Hb_002235_370 0.1436353477 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_002671_060 0.1449818781 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
15 Hb_001832_210 0.1451632535 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_016564_060 0.1451715925 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
17 Hb_002078_250 0.1451803468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001048_070 0.1456991434 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
19 Hb_010174_190 0.1464779637 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
20 Hb_001776_100 0.1465859816 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002324_040 Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_002324_040--Hb_003025_150 Hb_012727_010 Hb_012727_010 Hb_002324_040--Hb_012727_010 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_003025_150--Hb_003579_040 Hb_003025_150--Hb_002324_050 Hb_003025_150--Hb_012727_010 Hb_002078_250 Hb_002078_250 Hb_003025_150--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003025_150--Hb_003656_170 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_012727_010--Hb_003579_040 Hb_002324_050--Hb_003656_170 Hb_002324_050--Hb_004032_250 Hb_003964_010 Hb_003964_010 Hb_002324_050--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170 Hb_000111_190 Hb_000111_190 Hb_003579_040--Hb_000111_190 Hb_000914_110 Hb_000914_110 Hb_003579_040--Hb_000914_110 Hb_004544_090 Hb_004544_090 Hb_003579_040--Hb_004544_090 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_010381_110 Hb_010381_110 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_001699_050 Hb_001699_050 Hb_004032_250--Hb_001699_050 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_004032_250--Hb_010381_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36602 107.756 45.3438 132.386 4.31177 3.05018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41084 2.26876 2.6597 69.8154 35.0718

CAGE analysis