Hb_003647_040

Information

Type -
Description -
Location Contig3647: 28347-29572
Sequence    

Annotation

kegg
ID rcu:RCOM_0358800
description hypothetical protein
nr
ID XP_002534082.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q57951
description Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0531 PE=3 SV=1
trembl
ID B9T763
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0358800 PE=4 SV=1
Gene Ontology
ID GO:0005886
description enod18 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37507: 28357-29498
cDNA
(Sanger)
(ID:Location)		 026_N20.ab1: 28469-29462

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012727_010 0.1161618106 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_001491_040 0.117188535 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_002119_040 0.1239075604 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000032_430 0.1334886252 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000866_320 0.1358674869 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000189_070 0.1457298241 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
8 Hb_006483_060 0.1502778712 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
9 Hb_002324_040 0.1510351565 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
10 Hb_000000_110 0.1538637982 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
11 Hb_001178_090 0.1546805973 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
12 Hb_002592_050 0.1547398661 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
13 Hb_005016_020 0.1559417376 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
14 Hb_160405_010 0.1599699696 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_139461_010 0.1632184923 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
16 Hb_005694_180 0.166220568 - - PREDICTED: cytochrome b5 [Jatropha curcas]
17 Hb_009838_120 0.1668458097 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
18 Hb_003025_150 0.1669102648 - - conserved hypothetical protein [Ricinus communis]
19 Hb_135720_010 0.1696407885 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
20 Hb_001178_080 0.1703166543 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003647_040 Hb_003647_040 Hb_012727_010 Hb_012727_010 Hb_003647_040--Hb_012727_010 Hb_001491_040 Hb_001491_040 Hb_003647_040--Hb_001491_040 Hb_002119_040 Hb_002119_040 Hb_003647_040--Hb_002119_040 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_001491_040--Hb_002119_040 Hb_002000_090 Hb_002000_090 Hb_001491_040--Hb_002000_090 Hb_005694_180 Hb_005694_180 Hb_001491_040--Hb_005694_180 Hb_002235_410 Hb_002235_410 Hb_001491_040--Hb_002235_410 Hb_004586_330 Hb_004586_330 Hb_001491_040--Hb_004586_330 Hb_002119_040--Hb_012727_010 Hb_002119_040--Hb_002324_040 Hb_000002_360 Hb_000002_360 Hb_002119_040--Hb_000002_360 Hb_002119_040--Hb_002000_090 Hb_001178_090 Hb_001178_090 Hb_000032_430--Hb_001178_090 Hb_160405_010 Hb_160405_010 Hb_000032_430--Hb_160405_010 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_003050_100 Hb_003050_100 Hb_000032_430--Hb_003050_100 Hb_009627_020 Hb_009627_020 Hb_000866_320--Hb_009627_020 Hb_007625_030 Hb_007625_030 Hb_000866_320--Hb_007625_030 Hb_009838_120 Hb_009838_120 Hb_000866_320--Hb_009838_120 Hb_002999_080 Hb_002999_080 Hb_000866_320--Hb_002999_080 Hb_000866_320--Hb_000002_360 Hb_004659_100 Hb_004659_100 Hb_000866_320--Hb_004659_100 Hb_042491_010 Hb_042491_010 Hb_000189_070--Hb_042491_010 Hb_033053_020 Hb_033053_020 Hb_000189_070--Hb_033053_020 Hb_000189_070--Hb_012727_010 Hb_036176_010 Hb_036176_010 Hb_000189_070--Hb_036176_010 Hb_032050_070 Hb_032050_070 Hb_000189_070--Hb_032050_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7332 86.1731 58.6371 220.983 15.0169 5.86525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.504 2.88326 8.55192 103.511 25.9873

CAGE analysis