Hb_036176_010

Information

Type -
Description -
Location Contig36176: 1576-2181
Sequence    

Annotation

kegg
ID tcc:TCM_021002
description Disease resistance family protein / LRR family protein, putative
nr
ID KDO41879.1
description hypothetical protein CISIN_1g002055mg [Citrus sinensis]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067DFX4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002055mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37192: 1678-1923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036176_010 0.0 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
2 Hb_042491_010 0.1290113081 - - JHL06P13.14 [Jatropha curcas]
3 Hb_011206_050 0.1466029458 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
4 Hb_002044_110 0.1569389534 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
5 Hb_000189_070 0.1743106553 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
6 Hb_002217_210 0.1783901205 - - -
7 Hb_005144_100 0.1806643552 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
8 Hb_000692_030 0.1816668319 - - nucleoredoxin, putative [Ricinus communis]
9 Hb_005237_070 0.1837453422 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
10 Hb_009627_020 0.1854031998 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
11 Hb_004218_220 0.1878664071 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_005081_030 0.1899236346 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
13 Hb_008959_050 0.1926424689 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
14 Hb_055147_020 0.194892106 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
15 Hb_003010_010 0.1951360115 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
16 Hb_000566_170 0.1986059712 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
17 Hb_000975_130 0.2035440538 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
18 Hb_004635_040 0.2051067239 - - Polyprotein, putative [Solanum demissum]
19 Hb_000956_060 0.2052809407 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
20 Hb_000479_230 0.2062417437 - - hypothetical protein JCGZ_19903 [Jatropha curcas]

Gene co-expression network

sample Hb_036176_010 Hb_036176_010 Hb_042491_010 Hb_042491_010 Hb_036176_010--Hb_042491_010 Hb_011206_050 Hb_011206_050 Hb_036176_010--Hb_011206_050 Hb_002044_110 Hb_002044_110 Hb_036176_010--Hb_002044_110 Hb_000189_070 Hb_000189_070 Hb_036176_010--Hb_000189_070 Hb_002217_210 Hb_002217_210 Hb_036176_010--Hb_002217_210 Hb_005144_100 Hb_005144_100 Hb_036176_010--Hb_005144_100 Hb_038718_010 Hb_038718_010 Hb_042491_010--Hb_038718_010 Hb_004218_220 Hb_004218_220 Hb_042491_010--Hb_004218_220 Hb_042491_010--Hb_000189_070 Hb_042491_010--Hb_011206_050 Hb_033053_020 Hb_033053_020 Hb_042491_010--Hb_033053_020 Hb_000566_170 Hb_000566_170 Hb_011206_050--Hb_000566_170 Hb_011206_050--Hb_002044_110 Hb_000510_210 Hb_000510_210 Hb_011206_050--Hb_000510_210 Hb_011206_050--Hb_004218_220 Hb_000975_130 Hb_000975_130 Hb_011206_050--Hb_000975_130 Hb_000956_060 Hb_000956_060 Hb_011206_050--Hb_000956_060 Hb_010614_020 Hb_010614_020 Hb_002044_110--Hb_010614_020 Hb_002044_110--Hb_002217_210 Hb_002044_110--Hb_004218_220 Hb_004635_040 Hb_004635_040 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_008959_050 Hb_008959_050 Hb_002044_110--Hb_008959_050 Hb_003647_040 Hb_003647_040 Hb_000189_070--Hb_003647_040 Hb_000189_070--Hb_033053_020 Hb_012727_010 Hb_012727_010 Hb_000189_070--Hb_012727_010 Hb_032050_070 Hb_032050_070 Hb_000189_070--Hb_032050_070 Hb_002217_210--Hb_004635_040 Hb_002217_210--Hb_005144_100 Hb_001922_020 Hb_001922_020 Hb_002217_210--Hb_001922_020 Hb_002217_210--Hb_010614_020 Hb_002217_210--Hb_008959_050 Hb_001998_260 Hb_001998_260 Hb_005144_100--Hb_001998_260 Hb_003266_060 Hb_003266_060 Hb_005144_100--Hb_003266_060 Hb_005144_100--Hb_008959_050 Hb_005144_100--Hb_004635_040 Hb_001799_090 Hb_001799_090 Hb_005144_100--Hb_001799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268714 3.05556 2.34978 6.15506 0.0834059 0.215887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.273926 4.13433 0

CAGE analysis