Hb_008959_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig8959: 44122-45089
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02600g
description hypothetical protein
nr
ID XP_012091459.1
description PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID A0A067JDM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21329 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61760: 43898-44729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008959_050 0.0 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
2 Hb_010573_040 0.107005755 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
3 Hb_002894_040 0.1121425281 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005144_100 0.113674369 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
5 Hb_002044_110 0.1152253669 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
6 Hb_010614_020 0.1232992386 - - BnaC05g27570D [Brassica napus]
7 Hb_004218_220 0.1246273469 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_003376_300 0.1278242976 - - Aquaporin PIP2.2, putative [Ricinus communis]
9 Hb_002217_210 0.1279079872 - - -
10 Hb_005679_120 0.1291842225 - - hypothetical protein RCOM_0284080 [Ricinus communis]
11 Hb_005087_030 0.1291964673 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
12 Hb_004635_040 0.1299186184 - - Polyprotein, putative [Solanum demissum]
13 Hb_036356_010 0.1308297663 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_000454_200 0.1344998317 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
15 Hb_009627_020 0.136040472 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
16 Hb_004631_100 0.1390896939 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
17 Hb_004659_100 0.1411679444 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006020_010 0.1426870955 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
19 Hb_002325_050 0.1467200493 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
20 Hb_001856_160 0.1474263101 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008959_050 Hb_008959_050 Hb_010573_040 Hb_010573_040 Hb_008959_050--Hb_010573_040 Hb_002894_040 Hb_002894_040 Hb_008959_050--Hb_002894_040 Hb_005144_100 Hb_005144_100 Hb_008959_050--Hb_005144_100 Hb_002044_110 Hb_002044_110 Hb_008959_050--Hb_002044_110 Hb_010614_020 Hb_010614_020 Hb_008959_050--Hb_010614_020 Hb_004218_220 Hb_004218_220 Hb_008959_050--Hb_004218_220 Hb_000110_030 Hb_000110_030 Hb_010573_040--Hb_000110_030 Hb_131662_010 Hb_131662_010 Hb_010573_040--Hb_131662_010 Hb_177215_020 Hb_177215_020 Hb_010573_040--Hb_177215_020 Hb_036356_010 Hb_036356_010 Hb_010573_040--Hb_036356_010 Hb_000771_030 Hb_000771_030 Hb_010573_040--Hb_000771_030 Hb_007403_010 Hb_007403_010 Hb_002894_040--Hb_007403_010 Hb_002894_040--Hb_010614_020 Hb_000002_230 Hb_000002_230 Hb_002894_040--Hb_000002_230 Hb_007313_050 Hb_007313_050 Hb_002894_040--Hb_007313_050 Hb_002894_040--Hb_004218_220 Hb_002217_210 Hb_002217_210 Hb_005144_100--Hb_002217_210 Hb_001998_260 Hb_001998_260 Hb_005144_100--Hb_001998_260 Hb_003266_060 Hb_003266_060 Hb_005144_100--Hb_003266_060 Hb_004635_040 Hb_004635_040 Hb_005144_100--Hb_004635_040 Hb_001799_090 Hb_001799_090 Hb_005144_100--Hb_001799_090 Hb_002044_110--Hb_010614_020 Hb_002044_110--Hb_002217_210 Hb_002044_110--Hb_004218_220 Hb_002044_110--Hb_004635_040 Hb_002044_110--Hb_036356_010 Hb_010614_020--Hb_004635_040 Hb_010614_020--Hb_007403_010 Hb_010614_020--Hb_036356_010 Hb_010614_020--Hb_002217_210 Hb_000172_310 Hb_000172_310 Hb_004218_220--Hb_000172_310 Hb_055147_020 Hb_055147_020 Hb_004218_220--Hb_055147_020 Hb_011206_050 Hb_011206_050 Hb_004218_220--Hb_011206_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.54474 2.69177 5.91854 0 0.0238101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.9738 0.295143

CAGE analysis