Hb_004218_220

Information

Type -
Description -
Location Contig4218: 209140-210519
Sequence    

Annotation

kegg
ID rcu:RCOM_1452630
description o-methyltransferase, putative (EC:2.1.1.146)
nr
ID XP_002513062.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q6WUC2
description (R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum GN=PSOMT1 PE=1 SV=1
trembl
ID B9RGB0
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1452630 PE=4 SV=1
Gene Ontology
ID GO:0008171
description ( )-reticuline 7-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_220 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_000172_310 0.0722051274 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
3 Hb_002044_110 0.1071717798 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
4 Hb_002894_040 0.1172738093 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008959_050 0.1246273469 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
6 Hb_055147_020 0.1320560409 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
7 Hb_011206_050 0.1335367034 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
8 Hb_000128_090 0.135343193 - - Reticuline oxidase precursor, putative [Ricinus communis]
9 Hb_036356_010 0.1383669139 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_004096_140 0.1398923658 - - Lipase, putative [Ricinus communis]
11 Hb_010614_020 0.1399140498 - - BnaC05g27570D [Brassica napus]
12 Hb_000566_170 0.1403832735 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
13 Hb_042491_010 0.1408964705 - - JHL06P13.14 [Jatropha curcas]
14 Hb_001019_140 0.1427675912 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_038718_010 0.1427799666 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_096878_010 0.1445847743 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
17 Hb_002035_020 0.1460372802 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
18 Hb_000510_210 0.148191677 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
19 Hb_000635_190 0.1503144971 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
20 Hb_002217_210 0.1520921373 - - -

Gene co-expression network

sample Hb_004218_220 Hb_004218_220 Hb_000172_310 Hb_000172_310 Hb_004218_220--Hb_000172_310 Hb_002044_110 Hb_002044_110 Hb_004218_220--Hb_002044_110 Hb_002894_040 Hb_002894_040 Hb_004218_220--Hb_002894_040 Hb_008959_050 Hb_008959_050 Hb_004218_220--Hb_008959_050 Hb_055147_020 Hb_055147_020 Hb_004218_220--Hb_055147_020 Hb_011206_050 Hb_011206_050 Hb_004218_220--Hb_011206_050 Hb_096878_010 Hb_096878_010 Hb_000172_310--Hb_096878_010 Hb_000635_190 Hb_000635_190 Hb_000172_310--Hb_000635_190 Hb_006721_060 Hb_006721_060 Hb_000172_310--Hb_006721_060 Hb_000172_310--Hb_055147_020 Hb_004096_140 Hb_004096_140 Hb_000172_310--Hb_004096_140 Hb_010614_020 Hb_010614_020 Hb_002044_110--Hb_010614_020 Hb_002217_210 Hb_002217_210 Hb_002044_110--Hb_002217_210 Hb_004635_040 Hb_004635_040 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_002044_110--Hb_008959_050 Hb_007403_010 Hb_007403_010 Hb_002894_040--Hb_007403_010 Hb_002894_040--Hb_010614_020 Hb_000002_230 Hb_000002_230 Hb_002894_040--Hb_000002_230 Hb_002894_040--Hb_008959_050 Hb_007313_050 Hb_007313_050 Hb_002894_040--Hb_007313_050 Hb_010573_040 Hb_010573_040 Hb_008959_050--Hb_010573_040 Hb_005144_100 Hb_005144_100 Hb_008959_050--Hb_005144_100 Hb_008959_050--Hb_010614_020 Hb_001416_170 Hb_001416_170 Hb_055147_020--Hb_001416_170 Hb_000975_130 Hb_000975_130 Hb_055147_020--Hb_000975_130 Hb_055147_020--Hb_096878_010 Hb_000111_120 Hb_000111_120 Hb_055147_020--Hb_000111_120 Hb_000566_170 Hb_000566_170 Hb_011206_050--Hb_000566_170 Hb_011206_050--Hb_002044_110 Hb_000510_210 Hb_000510_210 Hb_011206_050--Hb_000510_210 Hb_011206_050--Hb_000975_130 Hb_000956_060 Hb_000956_060 Hb_011206_050--Hb_000956_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.023366 0.0174421 0.0405606 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0168851 0

CAGE analysis