Hb_000635_190

Information

Type -
Description -
Location Contig635: 128588-139889
Sequence    

Annotation

kegg
ID pmum:103322127
description uncharacterized LOC103322127
nr
ID XP_008222230.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
swissprot
ID D3ZWE7
description HORMA domain-containing protein 1 OS=Rattus norvegicus GN=Hormad1 PE=3 SV=1
trembl
ID M5Y7W3
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016821mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51922: 130301-131047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_190 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
2 Hb_096878_010 0.032382592 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
3 Hb_006721_060 0.0419062724 - - RnaseH (mitochondrion) [Malus domestica]
4 Hb_003050_170 0.077620745 - - conserved hypothetical protein [Ricinus communis]
5 Hb_185830_090 0.0827476209 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000172_310 0.0959687117 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
7 Hb_004096_140 0.1137348105 - - Lipase, putative [Ricinus communis]
8 Hb_000060_080 0.1213099076 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
9 Hb_014549_010 0.1218933744 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
10 Hb_170632_010 0.129665827 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_000975_090 0.1313773159 - - Zeamatin precursor, putative [Ricinus communis]
12 Hb_133508_020 0.1324245065 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
13 Hb_003712_010 0.1364270218 - - protein binding protein, putative [Ricinus communis]
14 Hb_004154_010 0.1381535748 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
15 Hb_003968_010 0.1449235105 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_087314_010 0.1452338872 - - -
17 Hb_015934_100 0.1498684202 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
18 Hb_004218_220 0.1503144971 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_006916_120 0.1520327966 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
20 Hb_003878_020 0.1571744806 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000635_190 Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_000635_190--Hb_096878_010 Hb_006721_060 Hb_006721_060 Hb_000635_190--Hb_006721_060 Hb_003050_170 Hb_003050_170 Hb_000635_190--Hb_003050_170 Hb_185830_090 Hb_185830_090 Hb_000635_190--Hb_185830_090 Hb_000172_310 Hb_000172_310 Hb_000635_190--Hb_000172_310 Hb_004096_140 Hb_004096_140 Hb_000635_190--Hb_004096_140 Hb_096878_010--Hb_185830_090 Hb_096878_010--Hb_006721_060 Hb_096878_010--Hb_000172_310 Hb_096878_010--Hb_003050_170 Hb_133508_020 Hb_133508_020 Hb_096878_010--Hb_133508_020 Hb_006721_060--Hb_004096_140 Hb_006721_060--Hb_003050_170 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_003050_170--Hb_185830_090 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_003050_170--Hb_003968_010 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_185830_090--Hb_133508_020 Hb_185830_090--Hb_006721_060 Hb_004218_220 Hb_004218_220 Hb_000172_310--Hb_004218_220 Hb_055147_020 Hb_055147_020 Hb_000172_310--Hb_055147_020 Hb_000172_310--Hb_004096_140 Hb_001019_140 Hb_001019_140 Hb_004096_140--Hb_001019_140 Hb_048937_010 Hb_048937_010 Hb_004096_140--Hb_048937_010 Hb_004096_140--Hb_003968_010 Hb_138705_010 Hb_138705_010 Hb_004096_140--Hb_138705_010 Hb_004096_140--Hb_000060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0828048 0.140635 0.195027 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0451847 0

CAGE analysis