Hb_003050_170

Information

Type -
Description -
Location Contig3050: 170903-171357
Sequence    

Annotation

kegg
ID rcu:RCOM_0632980
description hypothetical protein
nr
ID XP_002519697.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S128
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000635_190 0.077620745 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
3 Hb_185830_090 0.0823907119 - - conserved hypothetical protein [Ricinus communis]
4 Hb_096878_010 0.0887538785 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
5 Hb_006721_060 0.0962666277 - - RnaseH (mitochondrion) [Malus domestica]
6 Hb_008725_030 0.1063951284 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003968_010 0.1138478648 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_004154_010 0.1174988822 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
9 Hb_003878_020 0.1254205184 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
10 Hb_005599_010 0.1266865396 - - Protein MLO, putative [Ricinus communis]
11 Hb_096974_010 0.136574115 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
12 Hb_004096_140 0.13883143 - - Lipase, putative [Ricinus communis]
13 Hb_004297_050 0.1396747141 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000060_080 0.1410443968 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
15 Hb_014549_010 0.1465616151 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
16 Hb_000509_090 0.1491649713 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_001989_040 0.1504431615 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
18 Hb_004544_010 0.1520312135 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
19 Hb_003712_010 0.1520615394 - - protein binding protein, putative [Ricinus communis]
20 Hb_000172_310 0.1550308841 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_170 Hb_003050_170 Hb_000635_190 Hb_000635_190 Hb_003050_170--Hb_000635_190 Hb_185830_090 Hb_185830_090 Hb_003050_170--Hb_185830_090 Hb_096878_010 Hb_096878_010 Hb_003050_170--Hb_096878_010 Hb_006721_060 Hb_006721_060 Hb_003050_170--Hb_006721_060 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_003050_170--Hb_003968_010 Hb_000635_190--Hb_096878_010 Hb_000635_190--Hb_006721_060 Hb_000635_190--Hb_185830_090 Hb_000172_310 Hb_000172_310 Hb_000635_190--Hb_000172_310 Hb_004096_140 Hb_004096_140 Hb_000635_190--Hb_004096_140 Hb_185830_090--Hb_096878_010 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_133508_020 Hb_133508_020 Hb_185830_090--Hb_133508_020 Hb_185830_090--Hb_006721_060 Hb_096878_010--Hb_006721_060 Hb_096878_010--Hb_000172_310 Hb_096878_010--Hb_133508_020 Hb_006721_060--Hb_004096_140 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_008725_030--Hb_003968_010 Hb_096974_010 Hb_096974_010 Hb_008725_030--Hb_096974_010 Hb_004544_010 Hb_004544_010 Hb_008725_030--Hb_004544_010 Hb_043522_010 Hb_043522_010 Hb_008725_030--Hb_043522_010 Hb_004297_050 Hb_004297_050 Hb_008725_030--Hb_004297_050 Hb_003968_010--Hb_004096_140 Hb_138705_010 Hb_138705_010 Hb_003968_010--Hb_138705_010 Hb_003968_010--Hb_096974_010 Hb_001019_140 Hb_001019_140 Hb_003968_010--Hb_001019_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.487462 0.881501 0.81065 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.242591 0

CAGE analysis