Hb_000172_310

Information

Type -
Description -
Location Contig172: 359640-360923
Sequence    

Annotation

kegg
ID rcu:RCOM_0984880
description hypothetical protein
nr
ID XP_012093258.1
description PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
swissprot
ID Q9FL53
description Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana GN=FLA21 PE=2 SV=1
trembl
ID A0A067LES2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24096 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_310 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
2 Hb_004218_220 0.0722051274 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_096878_010 0.0879520091 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
4 Hb_000635_190 0.0959687117 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
5 Hb_006721_060 0.1109410796 - - RnaseH (mitochondrion) [Malus domestica]
6 Hb_055147_020 0.1189912074 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
7 Hb_004096_140 0.1260530336 - - Lipase, putative [Ricinus communis]
8 Hb_107495_060 0.126475202 - - Cell division protein kinase, putative [Ricinus communis]
9 Hb_000128_090 0.1338891712 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_170632_010 0.1346438621 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_000060_080 0.1412025248 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
12 Hb_038718_010 0.1451487316 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_087314_010 0.1452294072 - - -
14 Hb_002035_020 0.1481584482 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
15 Hb_042491_010 0.1500051622 - - JHL06P13.14 [Jatropha curcas]
16 Hb_185830_090 0.15399386 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003050_170 0.1550308841 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000975_090 0.1552586156 - - Zeamatin precursor, putative [Ricinus communis]
19 Hb_011206_050 0.1561369959 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
20 Hb_133508_020 0.15898484 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000172_310 Hb_000172_310 Hb_004218_220 Hb_004218_220 Hb_000172_310--Hb_004218_220 Hb_096878_010 Hb_096878_010 Hb_000172_310--Hb_096878_010 Hb_000635_190 Hb_000635_190 Hb_000172_310--Hb_000635_190 Hb_006721_060 Hb_006721_060 Hb_000172_310--Hb_006721_060 Hb_055147_020 Hb_055147_020 Hb_000172_310--Hb_055147_020 Hb_004096_140 Hb_004096_140 Hb_000172_310--Hb_004096_140 Hb_002044_110 Hb_002044_110 Hb_004218_220--Hb_002044_110 Hb_002894_040 Hb_002894_040 Hb_004218_220--Hb_002894_040 Hb_008959_050 Hb_008959_050 Hb_004218_220--Hb_008959_050 Hb_004218_220--Hb_055147_020 Hb_011206_050 Hb_011206_050 Hb_004218_220--Hb_011206_050 Hb_096878_010--Hb_000635_190 Hb_185830_090 Hb_185830_090 Hb_096878_010--Hb_185830_090 Hb_096878_010--Hb_006721_060 Hb_003050_170 Hb_003050_170 Hb_096878_010--Hb_003050_170 Hb_133508_020 Hb_133508_020 Hb_096878_010--Hb_133508_020 Hb_000635_190--Hb_006721_060 Hb_000635_190--Hb_003050_170 Hb_000635_190--Hb_185830_090 Hb_000635_190--Hb_004096_140 Hb_006721_060--Hb_004096_140 Hb_006721_060--Hb_003050_170 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_001416_170 Hb_001416_170 Hb_055147_020--Hb_001416_170 Hb_000975_130 Hb_000975_130 Hb_055147_020--Hb_000975_130 Hb_055147_020--Hb_096878_010 Hb_000111_120 Hb_000111_120 Hb_055147_020--Hb_000111_120 Hb_001019_140 Hb_001019_140 Hb_004096_140--Hb_001019_140 Hb_048937_010 Hb_048937_010 Hb_004096_140--Hb_048937_010 Hb_003968_010 Hb_003968_010 Hb_004096_140--Hb_003968_010 Hb_138705_010 Hb_138705_010 Hb_004096_140--Hb_138705_010 Hb_004096_140--Hb_000060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.144377 0.161753 0.349608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106043 0

CAGE analysis