Hb_002894_040

Information

Type -
Description -
Location Contig2894: 28176-28994
Sequence    

Annotation

kegg
ID rcu:RCOM_1438780
description hypothetical protein
nr
ID XP_002512700.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RG31
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438780 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromatin assembly factor 1 subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002894_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007403_010 0.1036485909 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
3 Hb_010614_020 0.11177247 - - BnaC05g27570D [Brassica napus]
4 Hb_000002_230 0.1120127809 - - RING/U-box superfamily protein [Theobroma cacao]
5 Hb_008959_050 0.1121425281 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
6 Hb_007313_050 0.1140795356 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_004218_220 0.1172738093 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_004635_040 0.1269612602 - - Polyprotein, putative [Solanum demissum]
9 Hb_002044_110 0.1295943427 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
10 Hb_001213_080 0.1315667121 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
11 Hb_038718_010 0.1316904427 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_000128_090 0.1340449036 - - Reticuline oxidase precursor, putative [Ricinus communis]
13 Hb_010573_040 0.135240539 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
14 Hb_036356_010 0.1381648576 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_106728_020 0.1387348889 - - cytochrome P450, putative [Ricinus communis]
16 Hb_179118_010 0.1392097133 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_001277_420 0.1396236664 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
18 Hb_004590_010 0.144733157 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
19 Hb_000566_170 0.14618866 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
20 Hb_000510_210 0.1490249607 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002894_040 Hb_002894_040 Hb_007403_010 Hb_007403_010 Hb_002894_040--Hb_007403_010 Hb_010614_020 Hb_010614_020 Hb_002894_040--Hb_010614_020 Hb_000002_230 Hb_000002_230 Hb_002894_040--Hb_000002_230 Hb_008959_050 Hb_008959_050 Hb_002894_040--Hb_008959_050 Hb_007313_050 Hb_007313_050 Hb_002894_040--Hb_007313_050 Hb_004218_220 Hb_004218_220 Hb_002894_040--Hb_004218_220 Hb_007403_010--Hb_010614_020 Hb_004635_040 Hb_004635_040 Hb_007403_010--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_007403_010--Hb_036356_010 Hb_002044_110 Hb_002044_110 Hb_007403_010--Hb_002044_110 Hb_017661_020 Hb_017661_020 Hb_007403_010--Hb_017661_020 Hb_010614_020--Hb_004635_040 Hb_010614_020--Hb_036356_010 Hb_010614_020--Hb_002044_110 Hb_002217_210 Hb_002217_210 Hb_010614_020--Hb_002217_210 Hb_000203_150 Hb_000203_150 Hb_000002_230--Hb_000203_150 Hb_179118_010 Hb_179118_010 Hb_000002_230--Hb_179118_010 Hb_183209_020 Hb_183209_020 Hb_000002_230--Hb_183209_020 Hb_004590_010 Hb_004590_010 Hb_000002_230--Hb_004590_010 Hb_183820_010 Hb_183820_010 Hb_000002_230--Hb_183820_010 Hb_010573_040 Hb_010573_040 Hb_008959_050--Hb_010573_040 Hb_005144_100 Hb_005144_100 Hb_008959_050--Hb_005144_100 Hb_008959_050--Hb_002044_110 Hb_008959_050--Hb_010614_020 Hb_008959_050--Hb_004218_220 Hb_021443_020 Hb_021443_020 Hb_007313_050--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_007313_050--Hb_001213_080 Hb_003939_090 Hb_003939_090 Hb_007313_050--Hb_003939_090 Hb_001059_050 Hb_001059_050 Hb_007313_050--Hb_001059_050 Hb_035006_010 Hb_035006_010 Hb_007313_050--Hb_035006_010 Hb_000286_210 Hb_000286_210 Hb_007313_050--Hb_000286_210 Hb_000172_310 Hb_000172_310 Hb_004218_220--Hb_000172_310 Hb_004218_220--Hb_002044_110 Hb_055147_020 Hb_055147_020 Hb_004218_220--Hb_055147_020 Hb_011206_050 Hb_011206_050 Hb_004218_220--Hb_011206_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284505 15.5959 5.54016 19.6938 0.0285681 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0654246 0 0 8.48897 0.310522

CAGE analysis