Hb_036356_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig36356: 5875-7176
Sequence    

Annotation

kegg
ID rcu:RCOM_1326830
description transcription factor, putative
nr
ID XP_002520050.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9XIN7
description NAC domain-containing protein 40 OS=Arabidopsis thaliana GN=NTL8 PE=1 SV=1
trembl
ID B9S231
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1326830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036356_010 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_010614_020 0.0774221048 - - BnaC05g27570D [Brassica napus]
3 Hb_007403_010 0.1038699966 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
4 Hb_002044_110 0.1151370161 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
5 Hb_010573_040 0.1161846973 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
6 Hb_004635_040 0.1226104499 - - Polyprotein, putative [Solanum demissum]
7 Hb_008959_050 0.1308297663 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
8 Hb_002894_040 0.1381648576 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004218_220 0.1383669139 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_000110_030 0.1416902852 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_001019_140 0.1418638659 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_001628_030 0.1436185547 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
13 Hb_041145_010 0.146439844 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
14 Hb_002049_030 0.1538259933 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
15 Hb_001922_020 0.157710149 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002217_210 0.1581263225 - - -
17 Hb_138705_010 0.1617252688 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
18 Hb_004785_160 0.1645667279 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
19 Hb_000991_110 0.1730583776 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
20 Hb_004544_010 0.1747480944 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]

Gene co-expression network

sample Hb_036356_010 Hb_036356_010 Hb_010614_020 Hb_010614_020 Hb_036356_010--Hb_010614_020 Hb_007403_010 Hb_007403_010 Hb_036356_010--Hb_007403_010 Hb_002044_110 Hb_002044_110 Hb_036356_010--Hb_002044_110 Hb_010573_040 Hb_010573_040 Hb_036356_010--Hb_010573_040 Hb_004635_040 Hb_004635_040 Hb_036356_010--Hb_004635_040 Hb_008959_050 Hb_008959_050 Hb_036356_010--Hb_008959_050 Hb_010614_020--Hb_004635_040 Hb_010614_020--Hb_007403_010 Hb_010614_020--Hb_002044_110 Hb_002894_040 Hb_002894_040 Hb_010614_020--Hb_002894_040 Hb_002217_210 Hb_002217_210 Hb_010614_020--Hb_002217_210 Hb_007403_010--Hb_004635_040 Hb_007403_010--Hb_002894_040 Hb_007403_010--Hb_002044_110 Hb_017661_020 Hb_017661_020 Hb_007403_010--Hb_017661_020 Hb_002044_110--Hb_002217_210 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_002044_110--Hb_004635_040 Hb_002044_110--Hb_008959_050 Hb_000110_030 Hb_000110_030 Hb_010573_040--Hb_000110_030 Hb_131662_010 Hb_131662_010 Hb_010573_040--Hb_131662_010 Hb_010573_040--Hb_008959_050 Hb_177215_020 Hb_177215_020 Hb_010573_040--Hb_177215_020 Hb_000771_030 Hb_000771_030 Hb_010573_040--Hb_000771_030 Hb_004635_040--Hb_002217_210 Hb_005144_100 Hb_005144_100 Hb_004635_040--Hb_005144_100 Hb_008959_050--Hb_002894_040 Hb_008959_050--Hb_005144_100 Hb_008959_050--Hb_010614_020 Hb_008959_050--Hb_004218_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.03356 1.98269 3.1812 0 0.0234226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.2134 0

CAGE analysis