Hb_002217_210

Information

Type -
Description -
Location Contig2217: 234503-234945
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_210 0.0 - - -
2 Hb_004635_040 0.0901174416 - - Polyprotein, putative [Solanum demissum]
3 Hb_005144_100 0.0941403147 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
4 Hb_002044_110 0.1032285141 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
5 Hb_001922_020 0.1063817619 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010614_020 0.1179394179 - - BnaC05g27570D [Brassica napus]
7 Hb_008959_050 0.1279079872 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
8 Hb_003768_110 0.1283482913 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
9 Hb_004452_080 0.1361492694 - - ring finger protein, putative [Ricinus communis]
10 Hb_002236_070 0.147974153 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
11 Hb_006395_010 0.1480008458 - - hypothetical protein RCOM_0725500 [Ricinus communis]
12 Hb_003266_060 0.1493930204 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
13 Hb_004218_220 0.1520921373 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_000993_020 0.1538043795 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
15 Hb_036356_010 0.1581263225 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_011206_050 0.1614178512 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
17 Hb_000566_170 0.1636644824 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
18 Hb_055147_020 0.168036483 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
19 Hb_006020_010 0.1687272527 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
20 Hb_001998_260 0.1689879643 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_002217_210 Hb_002217_210 Hb_004635_040 Hb_004635_040 Hb_002217_210--Hb_004635_040 Hb_005144_100 Hb_005144_100 Hb_002217_210--Hb_005144_100 Hb_002044_110 Hb_002044_110 Hb_002217_210--Hb_002044_110 Hb_001922_020 Hb_001922_020 Hb_002217_210--Hb_001922_020 Hb_010614_020 Hb_010614_020 Hb_002217_210--Hb_010614_020 Hb_008959_050 Hb_008959_050 Hb_002217_210--Hb_008959_050 Hb_004635_040--Hb_010614_020 Hb_007403_010 Hb_007403_010 Hb_004635_040--Hb_007403_010 Hb_004635_040--Hb_002044_110 Hb_004635_040--Hb_005144_100 Hb_036356_010 Hb_036356_010 Hb_004635_040--Hb_036356_010 Hb_001998_260 Hb_001998_260 Hb_005144_100--Hb_001998_260 Hb_003266_060 Hb_003266_060 Hb_005144_100--Hb_003266_060 Hb_005144_100--Hb_008959_050 Hb_001799_090 Hb_001799_090 Hb_005144_100--Hb_001799_090 Hb_002044_110--Hb_010614_020 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_002044_110--Hb_036356_010 Hb_002044_110--Hb_008959_050 Hb_003768_110 Hb_003768_110 Hb_001922_020--Hb_003768_110 Hb_004452_080 Hb_004452_080 Hb_001922_020--Hb_004452_080 Hb_001922_020--Hb_002044_110 Hb_003413_020 Hb_003413_020 Hb_001922_020--Hb_003413_020 Hb_002236_070 Hb_002236_070 Hb_001922_020--Hb_002236_070 Hb_010614_020--Hb_007403_010 Hb_010614_020--Hb_036356_010 Hb_002894_040 Hb_002894_040 Hb_010614_020--Hb_002894_040 Hb_010573_040 Hb_010573_040 Hb_008959_050--Hb_010573_040 Hb_008959_050--Hb_002894_040 Hb_008959_050--Hb_010614_020 Hb_008959_050--Hb_004218_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.1886 1.28565 3.05724 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.0775 0

CAGE analysis