Hb_003413_020

Information

Type -
Description -
Location Contig3413: 32927-34348
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003413_020 0.0 - - -
2 Hb_001288_020 0.0951397001 - - -
3 Hb_002157_100 0.1005894663 - - -
4 Hb_008080_030 0.1347511607 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
5 Hb_004703_010 0.1435939498 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_001922_020 0.1450899931 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001005_170 0.15242199 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_009070_030 0.1644357474 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
9 Hb_001832_240 0.1724047236 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
10 Hb_002110_060 0.1757677626 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
11 Hb_010598_010 0.1758254922 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
12 Hb_001532_060 0.1767590167 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_004544_010 0.1770595069 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
14 Hb_072997_010 0.1796144238 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
15 Hb_000509_090 0.1808625245 - - Reticuline oxidase precursor, putative [Ricinus communis]
16 Hb_001454_290 0.1813873217 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_007017_110 0.1837234899 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_000862_060 0.1851468282 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002871_050 0.1864372771 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
20 Hb_000046_590 0.1868963261 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003413_020 Hb_003413_020 Hb_001288_020 Hb_001288_020 Hb_003413_020--Hb_001288_020 Hb_002157_100 Hb_002157_100 Hb_003413_020--Hb_002157_100 Hb_008080_030 Hb_008080_030 Hb_003413_020--Hb_008080_030 Hb_004703_010 Hb_004703_010 Hb_003413_020--Hb_004703_010 Hb_001922_020 Hb_001922_020 Hb_003413_020--Hb_001922_020 Hb_001005_170 Hb_001005_170 Hb_003413_020--Hb_001005_170 Hb_001158_110 Hb_001158_110 Hb_001288_020--Hb_001158_110 Hb_000086_720 Hb_000086_720 Hb_001288_020--Hb_000086_720 Hb_072997_010 Hb_072997_010 Hb_001288_020--Hb_072997_010 Hb_001288_020--Hb_001005_170 Hb_010598_010 Hb_010598_010 Hb_001288_020--Hb_010598_010 Hb_000862_060 Hb_000862_060 Hb_002157_100--Hb_000862_060 Hb_002045_260 Hb_002045_260 Hb_002157_100--Hb_002045_260 Hb_002157_100--Hb_008080_030 Hb_007017_110 Hb_007017_110 Hb_002157_100--Hb_007017_110 Hb_002374_360 Hb_002374_360 Hb_002157_100--Hb_002374_360 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_000046_590 Hb_000046_590 Hb_008080_030--Hb_000046_590 Hb_042098_010 Hb_042098_010 Hb_008080_030--Hb_042098_010 Hb_008080_030--Hb_004703_010 Hb_001532_060 Hb_001532_060 Hb_004703_010--Hb_001532_060 Hb_006262_030 Hb_006262_030 Hb_004703_010--Hb_006262_030 Hb_002110_060 Hb_002110_060 Hb_004703_010--Hb_002110_060 Hb_004703_010--Hb_002157_100 Hb_002217_210 Hb_002217_210 Hb_001922_020--Hb_002217_210 Hb_003768_110 Hb_003768_110 Hb_001922_020--Hb_003768_110 Hb_004452_080 Hb_004452_080 Hb_001922_020--Hb_004452_080 Hb_002044_110 Hb_002044_110 Hb_001922_020--Hb_002044_110 Hb_002236_070 Hb_002236_070 Hb_001922_020--Hb_002236_070 Hb_001862_160 Hb_001862_160 Hb_001005_170--Hb_001862_160 Hb_000656_120 Hb_000656_120 Hb_001005_170--Hb_000656_120 Hb_004096_010 Hb_004096_010 Hb_001005_170--Hb_004096_010 Hb_000563_180 Hb_000563_180 Hb_001005_170--Hb_000563_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.519483 0.969065 0.466455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.818319 0

CAGE analysis