Hb_000862_060

Information

Type -
Description -
Location Contig862: 57115-59419
Sequence    

Annotation

kegg
ID rcu:RCOM_0664340
description hypothetical protein
nr
ID XP_002533313.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4Z4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000862_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002374_360 0.0541106951 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
3 Hb_002157_100 0.1145264258 - - -
4 Hb_055147_010 0.1302978905 - - thioredoxin H-type 7 [Hevea brasiliensis]
5 Hb_003751_050 0.1389651606 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
6 Hb_008080_030 0.1423451384 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
7 Hb_043522_010 0.1431995202 - - -
8 Hb_002045_260 0.1489410287 - - calmodulin, putative [Ricinus communis]
9 Hb_004544_010 0.152567991 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
10 Hb_002615_010 0.1543794006 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
11 Hb_042098_010 0.1575986688 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_005433_030 0.1643176747 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
13 Hb_001635_230 0.166714397 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000893_050 0.1751713247 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_006478_140 0.1757503321 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
16 Hb_012404_050 0.1760690238 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
17 Hb_004785_120 0.1799485819 - - Receptor protein kinase 1 [Theobroma cacao]
18 Hb_000046_590 0.1842418188 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
19 Hb_003413_020 0.1851468282 - - -
20 Hb_005306_040 0.1876008991 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000862_060 Hb_000862_060 Hb_002374_360 Hb_002374_360 Hb_000862_060--Hb_002374_360 Hb_002157_100 Hb_002157_100 Hb_000862_060--Hb_002157_100 Hb_055147_010 Hb_055147_010 Hb_000862_060--Hb_055147_010 Hb_003751_050 Hb_003751_050 Hb_000862_060--Hb_003751_050 Hb_008080_030 Hb_008080_030 Hb_000862_060--Hb_008080_030 Hb_043522_010 Hb_043522_010 Hb_000862_060--Hb_043522_010 Hb_002374_360--Hb_003751_050 Hb_002374_360--Hb_002157_100 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002045_260 Hb_002045_260 Hb_002374_360--Hb_002045_260 Hb_002374_360--Hb_008080_030 Hb_003413_020 Hb_003413_020 Hb_002157_100--Hb_003413_020 Hb_002157_100--Hb_002045_260 Hb_002157_100--Hb_008080_030 Hb_007017_110 Hb_007017_110 Hb_002157_100--Hb_007017_110 Hb_004785_120 Hb_004785_120 Hb_055147_010--Hb_004785_120 Hb_012404_050 Hb_012404_050 Hb_055147_010--Hb_012404_050 Hb_000720_110 Hb_000720_110 Hb_055147_010--Hb_000720_110 Hb_000996_200 Hb_000996_200 Hb_055147_010--Hb_000996_200 Hb_000110_330 Hb_000110_330 Hb_055147_010--Hb_000110_330 Hb_000893_050 Hb_000893_050 Hb_003751_050--Hb_000893_050 Hb_003751_050--Hb_008080_030 Hb_000046_590 Hb_000046_590 Hb_003751_050--Hb_000046_590 Hb_006925_060 Hb_006925_060 Hb_003751_050--Hb_006925_060 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_008080_030--Hb_000046_590 Hb_042098_010 Hb_042098_010 Hb_008080_030--Hb_042098_010 Hb_004703_010 Hb_004703_010 Hb_008080_030--Hb_004703_010 Hb_008080_030--Hb_003413_020 Hb_004544_010 Hb_004544_010 Hb_043522_010--Hb_004544_010 Hb_008725_030 Hb_008725_030 Hb_043522_010--Hb_008725_030 Hb_004785_160 Hb_004785_160 Hb_043522_010--Hb_004785_160 Hb_043522_010--Hb_012404_050 Hb_002973_070 Hb_002973_070 Hb_043522_010--Hb_002973_070 Hb_001971_030 Hb_001971_030 Hb_043522_010--Hb_001971_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.291095 0.337441 0.0707704 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.170685 0

CAGE analysis