Hb_000893_050

Information

Type -
Description -
Location Contig893: 139344-141006
Sequence    

Annotation

kegg
ID rcu:RCOM_1674270
description structural constituent of cell wall, putative
nr
ID XP_002509463.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID Q9FZA2
description Non-classical arabinogalactan protein 31 OS=Arabidopsis thaliana GN=AGP31 PE=1 SV=1
trembl
ID B9RBC9
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_1674270 PE=4 SV=1
Gene Ontology
ID GO:0005199
description pistil-specific extensin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61705: 139855-140952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000893_050 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_003751_050 0.1050651013 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
3 Hb_002374_360 0.1634431881 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
4 Hb_006925_060 0.1670776861 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
5 Hb_000862_060 0.1751713247 - - conserved hypothetical protein [Ricinus communis]
6 Hb_055147_010 0.1787802381 - - thioredoxin H-type 7 [Hevea brasiliensis]
7 Hb_000046_590 0.1816427864 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_005306_040 0.185713134 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_008080_030 0.1927685543 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
10 Hb_003751_100 0.2020585101 - - Amino acid permease 2 [Glycine soja]
11 Hb_000720_110 0.2028007371 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
12 Hb_003529_230 0.2037823532 transcription factor TF Family: ERF -
13 Hb_004785_120 0.2051479105 - - Receptor protein kinase 1 [Theobroma cacao]
14 Hb_002615_010 0.2054689935 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
15 Hb_000343_280 0.2060996268 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
16 Hb_000111_220 0.2073159737 - - unnamed protein product [Vitis vinifera]
17 Hb_000130_080 0.2079402839 - - unnamed protein product [Vitis vinifera]
18 Hb_025236_020 0.2087673888 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
19 Hb_052434_010 0.2098844471 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
20 Hb_003680_250 0.2126146838 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000893_050 Hb_000893_050 Hb_003751_050 Hb_003751_050 Hb_000893_050--Hb_003751_050 Hb_002374_360 Hb_002374_360 Hb_000893_050--Hb_002374_360 Hb_006925_060 Hb_006925_060 Hb_000893_050--Hb_006925_060 Hb_000862_060 Hb_000862_060 Hb_000893_050--Hb_000862_060 Hb_055147_010 Hb_055147_010 Hb_000893_050--Hb_055147_010 Hb_000046_590 Hb_000046_590 Hb_000893_050--Hb_000046_590 Hb_003751_050--Hb_002374_360 Hb_003751_050--Hb_000862_060 Hb_008080_030 Hb_008080_030 Hb_003751_050--Hb_008080_030 Hb_003751_050--Hb_000046_590 Hb_003751_050--Hb_006925_060 Hb_002374_360--Hb_000862_060 Hb_002157_100 Hb_002157_100 Hb_002374_360--Hb_002157_100 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002045_260 Hb_002045_260 Hb_002374_360--Hb_002045_260 Hb_002374_360--Hb_008080_030 Hb_000001_010 Hb_000001_010 Hb_006925_060--Hb_000001_010 Hb_063523_010 Hb_063523_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_005628_050 Hb_005628_050 Hb_006925_060--Hb_005628_050 Hb_187991_010 Hb_187991_010 Hb_006925_060--Hb_187991_010 Hb_000862_060--Hb_002157_100 Hb_000862_060--Hb_055147_010 Hb_000862_060--Hb_008080_030 Hb_043522_010 Hb_043522_010 Hb_000862_060--Hb_043522_010 Hb_004785_120 Hb_004785_120 Hb_055147_010--Hb_004785_120 Hb_012404_050 Hb_012404_050 Hb_055147_010--Hb_012404_050 Hb_000720_110 Hb_000720_110 Hb_055147_010--Hb_000720_110 Hb_000996_200 Hb_000996_200 Hb_055147_010--Hb_000996_200 Hb_000110_330 Hb_000110_330 Hb_055147_010--Hb_000110_330 Hb_008215_010 Hb_008215_010 Hb_000046_590--Hb_008215_010 Hb_001832_240 Hb_001832_240 Hb_000046_590--Hb_001832_240 Hb_000598_020 Hb_000598_020 Hb_000046_590--Hb_000598_020 Hb_000046_590--Hb_008080_030 Hb_007765_140 Hb_007765_140 Hb_000046_590--Hb_007765_140 Hb_000046_590--Hb_187991_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44109 33.0927 26.9644 5.03467 1.98771 0.368768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0619064 20.6902 0.344295

CAGE analysis