Hb_002374_360

Information

Type -
Description -
Location Contig2374: 336545-341348
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08300g
description POPTRDRAFT_551444; hypothetical protein
nr
ID XP_002302231.2
description hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
swissprot
ID Q8VYX0
description IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2
trembl
ID B9GU29
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08300g PE=4 SV=2
Gene Ontology
ID GO:0047980
description iaa-amino acid hydrolase ilr1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24901: 337709-338052 , PASA_asmbl_24902: 336332-341328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_360 0.0 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
2 Hb_000862_060 0.0541106951 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003751_050 0.1223657146 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
4 Hb_002157_100 0.131836809 - - -
5 Hb_005433_030 0.1332736334 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
6 Hb_002045_260 0.1361575528 - - calmodulin, putative [Ricinus communis]
7 Hb_008080_030 0.1469898767 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
8 Hb_002615_010 0.149889342 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
9 Hb_055147_010 0.1521405301 - - thioredoxin H-type 7 [Hevea brasiliensis]
10 Hb_042098_010 0.1534016297 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_000893_050 0.1634431881 - - structural constituent of cell wall, putative [Ricinus communis]
12 Hb_001635_230 0.1706457461 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_006478_140 0.1726556674 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
14 Hb_043522_010 0.1765090164 - - -
15 Hb_011622_010 0.1863042644 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
16 Hb_001246_150 0.1863667739 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
17 Hb_004544_010 0.1871810682 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
18 Hb_004785_120 0.1873313951 - - Receptor protein kinase 1 [Theobroma cacao]
19 Hb_005211_110 0.1885415592 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
20 Hb_048308_010 0.1886766745 - - Peroxidase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002374_360 Hb_002374_360 Hb_000862_060 Hb_000862_060 Hb_002374_360--Hb_000862_060 Hb_003751_050 Hb_003751_050 Hb_002374_360--Hb_003751_050 Hb_002157_100 Hb_002157_100 Hb_002374_360--Hb_002157_100 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002045_260 Hb_002045_260 Hb_002374_360--Hb_002045_260 Hb_008080_030 Hb_008080_030 Hb_002374_360--Hb_008080_030 Hb_000862_060--Hb_002157_100 Hb_055147_010 Hb_055147_010 Hb_000862_060--Hb_055147_010 Hb_000862_060--Hb_003751_050 Hb_000862_060--Hb_008080_030 Hb_043522_010 Hb_043522_010 Hb_000862_060--Hb_043522_010 Hb_000893_050 Hb_000893_050 Hb_003751_050--Hb_000893_050 Hb_003751_050--Hb_008080_030 Hb_000046_590 Hb_000046_590 Hb_003751_050--Hb_000046_590 Hb_006925_060 Hb_006925_060 Hb_003751_050--Hb_006925_060 Hb_003413_020 Hb_003413_020 Hb_002157_100--Hb_003413_020 Hb_002157_100--Hb_002045_260 Hb_002157_100--Hb_008080_030 Hb_007017_110 Hb_007017_110 Hb_002157_100--Hb_007017_110 Hb_092458_010 Hb_092458_010 Hb_005433_030--Hb_092458_010 Hb_002615_010 Hb_002615_010 Hb_005433_030--Hb_002615_010 Hb_002107_110 Hb_002107_110 Hb_005433_030--Hb_002107_110 Hb_042098_010 Hb_042098_010 Hb_005433_030--Hb_042098_010 Hb_005433_030--Hb_006925_060 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_002045_260--Hb_042098_010 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002045_260--Hb_007017_110 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_008080_030--Hb_000046_590 Hb_008080_030--Hb_042098_010 Hb_004703_010 Hb_004703_010 Hb_008080_030--Hb_004703_010 Hb_008080_030--Hb_003413_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0133132 18.259 22.6106 3.40033 0.0391445 0.0132813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.023855 0 10.7371 0.0999175

CAGE analysis