Hb_042098_010

Information

Type -
Description -
Location Contig42098: 3151-5168
Sequence    

Annotation

kegg
ID tcc:TCM_036537
description 12-oxophytodienoate reductase 2
nr
ID XP_007020161.1
description 12-oxophytodienoate reductase 2 [Theobroma cacao]
swissprot
ID B9FSC8
description Putative 12-oxophytodienoate reductase 11 OS=Oryza sativa subsp. japonica GN=OPR11 PE=2 SV=1
trembl
ID A0A061FJX4
description 12-oxophytodienoate reductase 2 OS=Theobroma cacao GN=TCM_036537 PE=4 SV=1
Gene Ontology
ID GO:0010181
description 12-oxophytodienoate reductase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042098_010 0.0 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
2 Hb_001581_040 0.1101017937 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_002045_260 0.1244852084 - - calmodulin, putative [Ricinus communis]
4 Hb_008080_030 0.1259708022 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
5 Hb_005628_050 0.1290761746 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
6 Hb_000001_010 0.1301285731 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
7 Hb_002774_180 0.1325049102 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_001635_230 0.1326016693 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_002107_110 0.1347364939 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
10 Hb_006262_030 0.1359064381 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_000771_040 0.1387582876 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
12 Hb_001619_020 0.1450091417 - - LRR receptor-like kinase family protein [Medicago truncatula]
13 Hb_002615_010 0.1480610992 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
14 Hb_002374_360 0.1534016297 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
15 Hb_000031_160 0.1542541639 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
16 Hb_000018_090 0.1573534073 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000862_060 0.1575986688 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001971_030 0.1578004565 - - PREDICTED: exonuclease 1 [Jatropha curcas]
19 Hb_002973_070 0.1584298404 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
20 Hb_005433_030 0.1593254272 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_042098_010 Hb_042098_010 Hb_001581_040 Hb_001581_040 Hb_042098_010--Hb_001581_040 Hb_002045_260 Hb_002045_260 Hb_042098_010--Hb_002045_260 Hb_008080_030 Hb_008080_030 Hb_042098_010--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_042098_010--Hb_005628_050 Hb_000001_010 Hb_000001_010 Hb_042098_010--Hb_000001_010 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180 Hb_000771_040 Hb_000771_040 Hb_001581_040--Hb_000771_040 Hb_000111_240 Hb_000111_240 Hb_001581_040--Hb_000111_240 Hb_018633_010 Hb_018633_010 Hb_001581_040--Hb_018633_010 Hb_002995_010 Hb_002995_010 Hb_001581_040--Hb_002995_010 Hb_002107_110 Hb_002107_110 Hb_001581_040--Hb_002107_110 Hb_002157_100 Hb_002157_100 Hb_002045_260--Hb_002157_100 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002374_360 Hb_002374_360 Hb_002045_260--Hb_002374_360 Hb_007017_110 Hb_007017_110 Hb_002045_260--Hb_007017_110 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_008080_030--Hb_002157_100 Hb_000046_590 Hb_000046_590 Hb_008080_030--Hb_000046_590 Hb_004703_010 Hb_004703_010 Hb_008080_030--Hb_004703_010 Hb_003413_020 Hb_003413_020 Hb_008080_030--Hb_003413_020 Hb_000031_160 Hb_000031_160 Hb_005628_050--Hb_000031_160 Hb_005628_050--Hb_001832_240 Hb_000382_030 Hb_000382_030 Hb_005628_050--Hb_000382_030 Hb_001377_130 Hb_001377_130 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120 Hb_000001_010--Hb_005628_050 Hb_006925_060 Hb_006925_060 Hb_000001_010--Hb_006925_060 Hb_052434_010 Hb_052434_010 Hb_000001_010--Hb_052434_010 Hb_000001_010--Hb_002107_110 Hb_000495_050 Hb_000495_050 Hb_000001_010--Hb_000495_050 Hb_002973_070 Hb_002973_070 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_002774_180--Hb_000771_040 Hb_009476_070 Hb_009476_070 Hb_002774_180--Hb_009476_070 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.15511 3.44794 0.854482 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.03431 0 0 1.35911 0.281328

CAGE analysis