Hb_000111_240

Information

Type -
Description -
Location Contig111: 270343-274539
Sequence    

Annotation

kegg
ID mus:103977338
description glutamate receptor 2.7-like
nr
ID XP_010914297.1
description PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
swissprot
ID Q8GXJ4
description Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2
trembl
ID M0SBW5
description Glutamate receptor OS=Musa acuminata subsp. malaccensis PE=3 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03393: 271086-272204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_240 0.0 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
2 Hb_018633_010 0.0465550838 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_001581_040 0.080862466 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_140000_010 0.1064433815 - - receptor-kinase, putative [Ricinus communis]
5 Hb_000771_040 0.1150278935 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
6 Hb_086614_010 0.1190016563 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
7 Hb_077694_010 0.1373021831 - - uncharacterized protein LOC100305624 [Glycine max]
8 Hb_001001_010 0.1374851161 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
9 Hb_000035_140 0.1415997227 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
10 Hb_002107_110 0.1419002043 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
11 Hb_005599_020 0.1439096961 - - Protein MLO, putative [Ricinus communis]
12 Hb_034585_070 0.1543817846 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
13 Hb_004551_010 0.1544947613 - - tryptophan synthase beta chain, putative [Ricinus communis]
14 Hb_000359_260 0.156176657 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
15 Hb_002995_010 0.1569253984 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
16 Hb_042098_010 0.1594329472 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
17 Hb_001160_050 0.159867552 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
18 Hb_017693_040 0.1623381386 - - tyrosine kinase family protein [Medicago truncatula]
19 Hb_000836_420 0.1627579294 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_005834_050 0.1629232045 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000111_240 Hb_000111_240 Hb_018633_010 Hb_018633_010 Hb_000111_240--Hb_018633_010 Hb_001581_040 Hb_001581_040 Hb_000111_240--Hb_001581_040 Hb_140000_010 Hb_140000_010 Hb_000111_240--Hb_140000_010 Hb_000771_040 Hb_000771_040 Hb_000111_240--Hb_000771_040 Hb_086614_010 Hb_086614_010 Hb_000111_240--Hb_086614_010 Hb_077694_010 Hb_077694_010 Hb_000111_240--Hb_077694_010 Hb_018633_010--Hb_140000_010 Hb_018633_010--Hb_086614_010 Hb_018633_010--Hb_001581_040 Hb_005599_020 Hb_005599_020 Hb_018633_010--Hb_005599_020 Hb_018633_010--Hb_077694_010 Hb_001581_040--Hb_000771_040 Hb_042098_010 Hb_042098_010 Hb_001581_040--Hb_042098_010 Hb_002995_010 Hb_002995_010 Hb_001581_040--Hb_002995_010 Hb_002107_110 Hb_002107_110 Hb_001581_040--Hb_002107_110 Hb_034585_070 Hb_034585_070 Hb_140000_010--Hb_034585_070 Hb_140000_010--Hb_005599_020 Hb_031685_010 Hb_031685_010 Hb_140000_010--Hb_031685_010 Hb_006789_030 Hb_006789_030 Hb_140000_010--Hb_006789_030 Hb_009907_020 Hb_009907_020 Hb_000771_040--Hb_009907_020 Hb_001971_030 Hb_001971_030 Hb_000771_040--Hb_001971_030 Hb_002774_180 Hb_002774_180 Hb_000771_040--Hb_002774_180 Hb_160653_010 Hb_160653_010 Hb_000771_040--Hb_160653_010 Hb_086614_010--Hb_077694_010 Hb_006615_060 Hb_006615_060 Hb_086614_010--Hb_006615_060 Hb_074672_010 Hb_074672_010 Hb_086614_010--Hb_074672_010 Hb_164146_020 Hb_164146_020 Hb_086614_010--Hb_164146_020 Hb_121540_010 Hb_121540_010 Hb_077694_010--Hb_121540_010 Hb_017693_040 Hb_017693_040 Hb_077694_010--Hb_017693_040 Hb_005381_010 Hb_005381_010 Hb_077694_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_077694_010--Hb_000069_530 Hb_001660_080 Hb_001660_080 Hb_077694_010--Hb_001660_080 Hb_120011_010 Hb_120011_010 Hb_077694_010--Hb_120011_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.492937 1.03186 0.157066 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136366 0.12225

CAGE analysis