Hb_000771_040

Information

Type -
Description -
Location Contig771: 20019-22098
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01990g
description POPTRDRAFT_251037; hypothetical protein
nr
ID XP_012090100.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A067JQ94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25991 PE=3 SV=1
Gene Ontology
ID GO:0004674
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57637: 21147-21398 , PASA_asmbl_57638: 21414-22008 , PASA_asmbl_57639: 22345-22731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_040 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
2 Hb_001581_040 0.0774976823 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_009907_020 0.0976408933 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
4 Hb_001971_030 0.1042984897 - - PREDICTED: exonuclease 1 [Jatropha curcas]
5 Hb_002774_180 0.1093431379 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_000111_240 0.1150278935 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
7 Hb_160653_010 0.1179720061 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
8 Hb_001160_050 0.1182757476 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
9 Hb_001769_120 0.1247417071 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
10 Hb_002995_010 0.129639122 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
11 Hb_000836_420 0.1356176539 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_042098_010 0.1387582876 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
13 Hb_001776_130 0.1404386038 - - metallothionein [Hevea brasiliensis]
14 Hb_002973_070 0.1424515781 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
15 Hb_017693_040 0.144151972 - - tyrosine kinase family protein [Medicago truncatula]
16 Hb_000483_050 0.14470291 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
17 Hb_000878_090 0.1464841179 - - sucrose-phosphatase family protein [Populus trichocarpa]
18 Hb_000018_090 0.1470152518 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002311_500 0.1481423935 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
20 Hb_009476_070 0.1482088404 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000771_040 Hb_000771_040 Hb_001581_040 Hb_001581_040 Hb_000771_040--Hb_001581_040 Hb_009907_020 Hb_009907_020 Hb_000771_040--Hb_009907_020 Hb_001971_030 Hb_001971_030 Hb_000771_040--Hb_001971_030 Hb_002774_180 Hb_002774_180 Hb_000771_040--Hb_002774_180 Hb_000111_240 Hb_000111_240 Hb_000771_040--Hb_000111_240 Hb_160653_010 Hb_160653_010 Hb_000771_040--Hb_160653_010 Hb_001581_040--Hb_000111_240 Hb_042098_010 Hb_042098_010 Hb_001581_040--Hb_042098_010 Hb_018633_010 Hb_018633_010 Hb_001581_040--Hb_018633_010 Hb_002995_010 Hb_002995_010 Hb_001581_040--Hb_002995_010 Hb_002107_110 Hb_002107_110 Hb_001581_040--Hb_002107_110 Hb_000878_090 Hb_000878_090 Hb_009907_020--Hb_000878_090 Hb_001160_050 Hb_001160_050 Hb_009907_020--Hb_001160_050 Hb_002311_500 Hb_002311_500 Hb_009907_020--Hb_002311_500 Hb_001769_120 Hb_001769_120 Hb_009907_020--Hb_001769_120 Hb_008749_010 Hb_008749_010 Hb_009907_020--Hb_008749_010 Hb_000483_050 Hb_000483_050 Hb_001971_030--Hb_000483_050 Hb_002973_070 Hb_002973_070 Hb_001971_030--Hb_002973_070 Hb_008948_070 Hb_008948_070 Hb_001971_030--Hb_008948_070 Hb_001971_030--Hb_002774_180 Hb_008725_030 Hb_008725_030 Hb_001971_030--Hb_008725_030 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_009476_070 Hb_009476_070 Hb_002774_180--Hb_009476_070 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160 Hb_000111_240--Hb_018633_010 Hb_140000_010 Hb_140000_010 Hb_000111_240--Hb_140000_010 Hb_086614_010 Hb_086614_010 Hb_000111_240--Hb_086614_010 Hb_077694_010 Hb_077694_010 Hb_000111_240--Hb_077694_010 Hb_028486_010 Hb_028486_010 Hb_160653_010--Hb_028486_010 Hb_001430_010 Hb_001430_010 Hb_160653_010--Hb_001430_010 Hb_003060_150 Hb_003060_150 Hb_160653_010--Hb_003060_150 Hb_001369_670 Hb_001369_670 Hb_160653_010--Hb_001369_670 Hb_160653_010--Hb_001160_050 Hb_070634_010 Hb_070634_010 Hb_160653_010--Hb_070634_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0123352 7.70198 15.1547 5.25029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.66079 1.46596

CAGE analysis