Hb_001369_670

Information

Type -
Description -
Location Contig1369: 532584-535913
Sequence    

Annotation

kegg
ID tcc:TCM_014978
description Leucine-rich repeat protein kinase family protein isoform 1
nr
ID XP_012090406.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
swissprot
ID Q6R2J8
description Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1
trembl
ID A0A067JHW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26224 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g10290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10219: 532401-536169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_670 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
2 Hb_000172_410 0.0895365094 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_003078_070 0.1067800202 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
4 Hb_160653_010 0.1093445511 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_003060_150 0.1120903275 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_004837_200 0.1185615672 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
7 Hb_121540_010 0.1205649372 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
8 Hb_000836_420 0.1253629339 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_028486_010 0.125406127 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_001430_010 0.1261146056 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
11 Hb_000069_530 0.1262309906 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
12 Hb_001660_080 0.1277113653 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
13 Hb_005381_010 0.1310277372 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
14 Hb_182167_010 0.1357314307 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
15 Hb_004612_020 0.1407440198 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
16 Hb_004109_240 0.1421350902 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_002374_030 0.1426548763 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
18 Hb_000071_090 0.1429257657 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
19 Hb_012022_020 0.1440093028 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
20 Hb_189208_060 0.1446625745 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_670 Hb_001369_670 Hb_000172_410 Hb_000172_410 Hb_001369_670--Hb_000172_410 Hb_003078_070 Hb_003078_070 Hb_001369_670--Hb_003078_070 Hb_160653_010 Hb_160653_010 Hb_001369_670--Hb_160653_010 Hb_003060_150 Hb_003060_150 Hb_001369_670--Hb_003060_150 Hb_004837_200 Hb_004837_200 Hb_001369_670--Hb_004837_200 Hb_121540_010 Hb_121540_010 Hb_001369_670--Hb_121540_010 Hb_000172_410--Hb_003078_070 Hb_000172_410--Hb_121540_010 Hb_002400_020 Hb_002400_020 Hb_000172_410--Hb_002400_020 Hb_004109_240 Hb_004109_240 Hb_000172_410--Hb_004109_240 Hb_001660_080 Hb_001660_080 Hb_000172_410--Hb_001660_080 Hb_000985_140 Hb_000985_140 Hb_003078_070--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_003078_070--Hb_021254_020 Hb_003078_070--Hb_004837_200 Hb_000071_090 Hb_000071_090 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420 Hb_028486_010 Hb_028486_010 Hb_160653_010--Hb_028486_010 Hb_001430_010 Hb_001430_010 Hb_160653_010--Hb_001430_010 Hb_160653_010--Hb_003060_150 Hb_001160_050 Hb_001160_050 Hb_160653_010--Hb_001160_050 Hb_070634_010 Hb_070634_010 Hb_160653_010--Hb_070634_010 Hb_000069_530 Hb_000069_530 Hb_003060_150--Hb_000069_530 Hb_003060_150--Hb_121540_010 Hb_005381_010 Hb_005381_010 Hb_003060_150--Hb_005381_010 Hb_003060_150--Hb_028486_010 Hb_003060_150--Hb_001660_080 Hb_009252_090 Hb_009252_090 Hb_003060_150--Hb_009252_090 Hb_004837_200--Hb_000836_420 Hb_189208_060 Hb_189208_060 Hb_004837_200--Hb_189208_060 Hb_004837_200--Hb_000172_410 Hb_001769_120 Hb_001769_120 Hb_004837_200--Hb_001769_120 Hb_121540_010--Hb_005381_010 Hb_121540_010--Hb_000069_530 Hb_121540_010--Hb_028486_010 Hb_077694_010 Hb_077694_010 Hb_121540_010--Hb_077694_010 Hb_121540_010--Hb_001660_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.676593 15.3856 17.7909 8.19491 0.281893 0.0450002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.132543 0.0173816 0 1.00252 2.02148

CAGE analysis