Hb_000069_530

Information

Type transcription factor
Description TF Family: WRKY
Location Contig69: 577873-579913
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09190g
description POPTRDRAFT_834779; hypothetical protein
nr
ID XP_002320852.2
description hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
swissprot
ID Q9SKD9
description Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1
trembl
ID B9I8V9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54255: 577924-579949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_530 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
2 Hb_005381_010 0.0500225962 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
3 Hb_003060_150 0.0552406189 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_121540_010 0.0719608352 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
5 Hb_077694_010 0.0928905245 - - uncharacterized protein LOC100305624 [Glycine max]
6 Hb_000592_070 0.0970993305 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
7 Hb_001660_080 0.0981369945 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
8 Hb_009252_090 0.0990312446 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_182167_010 0.1074870816 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
10 Hb_012400_020 0.1112984626 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_017693_040 0.1124990906 - - tyrosine kinase family protein [Medicago truncatula]
12 Hb_004612_020 0.1126628109 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
13 Hb_012022_020 0.1150691542 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
14 Hb_002133_010 0.1180153377 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_028486_010 0.1196613911 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
16 Hb_000172_410 0.1229468113 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_160653_010 0.1246038261 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_001369_670 0.1262309906 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_012496_020 0.1308785808 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_120011_010 0.1310468115 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_530 Hb_000069_530 Hb_005381_010 Hb_005381_010 Hb_000069_530--Hb_005381_010 Hb_003060_150 Hb_003060_150 Hb_000069_530--Hb_003060_150 Hb_121540_010 Hb_121540_010 Hb_000069_530--Hb_121540_010 Hb_077694_010 Hb_077694_010 Hb_000069_530--Hb_077694_010 Hb_000592_070 Hb_000592_070 Hb_000069_530--Hb_000592_070 Hb_001660_080 Hb_001660_080 Hb_000069_530--Hb_001660_080 Hb_005381_010--Hb_121540_010 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_005381_010--Hb_001660_080 Hb_005381_010--Hb_077694_010 Hb_003060_150--Hb_121540_010 Hb_028486_010 Hb_028486_010 Hb_003060_150--Hb_028486_010 Hb_003060_150--Hb_001660_080 Hb_009252_090 Hb_009252_090 Hb_003060_150--Hb_009252_090 Hb_121540_010--Hb_028486_010 Hb_121540_010--Hb_077694_010 Hb_121540_010--Hb_001660_080 Hb_017693_040 Hb_017693_040 Hb_077694_010--Hb_017693_040 Hb_077694_010--Hb_001660_080 Hb_120011_010 Hb_120011_010 Hb_077694_010--Hb_120011_010 Hb_002133_010 Hb_002133_010 Hb_000592_070--Hb_002133_010 Hb_012400_020 Hb_012400_020 Hb_000592_070--Hb_012400_020 Hb_000592_070--Hb_009252_090 Hb_031266_020 Hb_031266_020 Hb_000592_070--Hb_031266_020 Hb_000592_070--Hb_003060_150 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 82.5858 104.907 36.7831 0.11047 0.01382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0313977 0 0.0464005 2.44539 7.02663

CAGE analysis