Hb_000592_070

Information

Type -
Description -
Location Contig592: 121892-122386
Sequence    

Annotation

kegg
ID tcc:TCM_012743
description Calcium-binding EF-hand family protein
nr
ID XP_012088541.1
description PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
swissprot
ID Q9LE22
description Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1
trembl
ID A0A067JJ61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27077 PE=4 SV=1
Gene Ontology
ID GO:0005773
description probable calcium-binding protein cml27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50294: 121506-122405
cDNA
(Sanger)
(ID:Location)		 048_E01.ab1: 121763-122398 , 049_K10.ab1: 121790-122403 , 050_O24.ab1: 121790-122395

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_070 0.0 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
2 Hb_002133_010 0.0572369323 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
3 Hb_012400_020 0.0797778036 - - Spotted leaf protein, putative [Ricinus communis]
4 Hb_009252_090 0.0962888959 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_000069_530 0.0970993305 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
6 Hb_031266_020 0.1048715284 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
7 Hb_003060_150 0.116991519 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_000997_130 0.1175116006 - - DNA binding protein, putative [Ricinus communis]
9 Hb_100395_010 0.1203309202 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000256_180 0.1251330405 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
11 Hb_004551_010 0.1255418089 - - tryptophan synthase beta chain, putative [Ricinus communis]
12 Hb_005381_010 0.1270221125 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
13 Hb_000192_030 0.1280097249 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
14 Hb_046610_010 0.1301737513 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_004899_010 0.1317739952 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
16 Hb_004612_020 0.1331325411 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
17 Hb_000164_160 0.1336751153 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
18 Hb_128083_010 0.1372850657 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
19 Hb_002048_100 0.1384221116 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
20 Hb_007546_010 0.1395223313 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000592_070 Hb_000592_070 Hb_002133_010 Hb_002133_010 Hb_000592_070--Hb_002133_010 Hb_012400_020 Hb_012400_020 Hb_000592_070--Hb_012400_020 Hb_009252_090 Hb_009252_090 Hb_000592_070--Hb_009252_090 Hb_000069_530 Hb_000069_530 Hb_000592_070--Hb_000069_530 Hb_031266_020 Hb_031266_020 Hb_000592_070--Hb_031266_020 Hb_003060_150 Hb_003060_150 Hb_000592_070--Hb_003060_150 Hb_002133_010--Hb_012400_020 Hb_000997_130 Hb_000997_130 Hb_002133_010--Hb_000997_130 Hb_164577_010 Hb_164577_010 Hb_002133_010--Hb_164577_010 Hb_002133_010--Hb_000069_530 Hb_002133_010--Hb_009252_090 Hb_012400_020--Hb_009252_090 Hb_021142_030 Hb_021142_030 Hb_012400_020--Hb_021142_030 Hb_046610_010 Hb_046610_010 Hb_012400_020--Hb_046610_010 Hb_012400_020--Hb_000997_130 Hb_009252_090--Hb_000069_530 Hb_009252_090--Hb_003060_150 Hb_004551_010 Hb_004551_010 Hb_009252_090--Hb_004551_010 Hb_009252_090--Hb_031266_020 Hb_005381_010 Hb_005381_010 Hb_000069_530--Hb_005381_010 Hb_000069_530--Hb_003060_150 Hb_121540_010 Hb_121540_010 Hb_000069_530--Hb_121540_010 Hb_077694_010 Hb_077694_010 Hb_000069_530--Hb_077694_010 Hb_001660_080 Hb_001660_080 Hb_000069_530--Hb_001660_080 Hb_031266_020--Hb_004551_010 Hb_002048_100 Hb_002048_100 Hb_031266_020--Hb_002048_100 Hb_031266_020--Hb_002133_010 Hb_000134_260 Hb_000134_260 Hb_031266_020--Hb_000134_260 Hb_003060_150--Hb_121540_010 Hb_003060_150--Hb_005381_010 Hb_028486_010 Hb_028486_010 Hb_003060_150--Hb_028486_010 Hb_003060_150--Hb_001660_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86746 2480.95 3806.5 1436.19 4.79309 4.00886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5069 46.2021 17.7602 53.2151 94.7762

CAGE analysis