Hb_002048_100

Information

Type -
Description -
Location Contig2048: 76933-78931
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24930g
description 3-glucanase family protein
nr
ID XP_012085272.1
description PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
swissprot
ID Q06915
description Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1
trembl
ID A0A067LLN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15144 PE=3 SV=1
Gene Ontology
ID GO:0009505
description probable glucan endo- -beta-glucosidase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21097: 76743-78775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002048_100 0.0 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
2 Hb_001430_010 0.1163747021 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
3 Hb_004970_070 0.1268635462 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
4 Hb_002133_010 0.1305352139 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
5 Hb_031266_020 0.1309533084 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
6 Hb_003119_040 0.1381118728 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
7 Hb_015037_010 0.1381441063 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
8 Hb_000592_070 0.1384221116 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
9 Hb_023386_060 0.1407794127 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
10 Hb_004712_090 0.14155882 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
11 Hb_002540_100 0.142637731 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_011028_040 0.1452463595 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_006873_010 0.1461605621 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_009252_090 0.1467151662 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_160653_010 0.1488894881 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
16 Hb_004297_050 0.1554819571 - - cytochrome P450, putative [Ricinus communis]
17 Hb_004314_020 0.1569744086 - - Auxin-responsive GH3 family protein [Theobroma cacao]
18 Hb_128083_010 0.1577613379 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
19 Hb_064885_010 0.1611895252 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_155946_030 0.1621647755 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]

Gene co-expression network

sample Hb_002048_100 Hb_002048_100 Hb_001430_010 Hb_001430_010 Hb_002048_100--Hb_001430_010 Hb_004970_070 Hb_004970_070 Hb_002048_100--Hb_004970_070 Hb_002133_010 Hb_002133_010 Hb_002048_100--Hb_002133_010 Hb_031266_020 Hb_031266_020 Hb_002048_100--Hb_031266_020 Hb_003119_040 Hb_003119_040 Hb_002048_100--Hb_003119_040 Hb_015037_010 Hb_015037_010 Hb_002048_100--Hb_015037_010 Hb_160653_010 Hb_160653_010 Hb_001430_010--Hb_160653_010 Hb_010721_010 Hb_010721_010 Hb_001430_010--Hb_010721_010 Hb_001430_010--Hb_015037_010 Hb_011915_020 Hb_011915_020 Hb_001430_010--Hb_011915_020 Hb_023386_060 Hb_023386_060 Hb_001430_010--Hb_023386_060 Hb_007904_290 Hb_007904_290 Hb_004970_070--Hb_007904_290 Hb_004712_090 Hb_004712_090 Hb_004970_070--Hb_004712_090 Hb_001040_060 Hb_001040_060 Hb_004970_070--Hb_001040_060 Hb_001541_190 Hb_001541_190 Hb_004970_070--Hb_001541_190 Hb_000134_260 Hb_000134_260 Hb_004970_070--Hb_000134_260 Hb_000592_070 Hb_000592_070 Hb_002133_010--Hb_000592_070 Hb_012400_020 Hb_012400_020 Hb_002133_010--Hb_012400_020 Hb_000997_130 Hb_000997_130 Hb_002133_010--Hb_000997_130 Hb_164577_010 Hb_164577_010 Hb_002133_010--Hb_164577_010 Hb_000069_530 Hb_000069_530 Hb_002133_010--Hb_000069_530 Hb_009252_090 Hb_009252_090 Hb_002133_010--Hb_009252_090 Hb_004551_010 Hb_004551_010 Hb_031266_020--Hb_004551_010 Hb_031266_020--Hb_000592_070 Hb_031266_020--Hb_009252_090 Hb_031266_020--Hb_002133_010 Hb_031266_020--Hb_000134_260 Hb_000193_060 Hb_000193_060 Hb_003119_040--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_003119_040--Hb_006060_010 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_002200_020 Hb_002200_020 Hb_015037_010--Hb_002200_020 Hb_070634_010 Hb_070634_010 Hb_015037_010--Hb_070634_010 Hb_000392_170 Hb_000392_170 Hb_015037_010--Hb_000392_170 Hb_008806_040 Hb_008806_040 Hb_015037_010--Hb_008806_040 Hb_006873_010 Hb_006873_010 Hb_015037_010--Hb_006873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.337026 20.1222 38.7687 23.9067 0.171069 0.0805245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.56997 0.604438 0.700843 1.88658 1.47958

CAGE analysis