Hb_003119_040

Information

Type -
Description -
Location Contig3119: 20506-20901
Sequence    

Annotation

kegg
ID pop:POPTR_0017s07700g
description hypothetical protein
nr
ID XP_011043100.1
description PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID I3S0H2
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32967: 20445-20842 , PASA_asmbl_32971: 21346-25090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_040 0.0 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
2 Hb_000193_060 0.119508328 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
3 Hb_006060_010 0.1303989361 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
4 Hb_002048_100 0.1381118728 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
5 Hb_006153_010 0.1383505018 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
6 Hb_005599_010 0.1469891704 - - Protein MLO, putative [Ricinus communis]
7 Hb_004154_010 0.148965248 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
8 Hb_002540_100 0.1652714367 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
9 Hb_015037_010 0.1662816714 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
10 Hb_003878_060 0.1698245654 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
11 Hb_000260_610 0.1705473938 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
12 Hb_014549_010 0.1756115942 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
13 Hb_006197_010 0.175855053 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
14 Hb_000878_120 0.1760212372 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
15 Hb_003226_060 0.176743676 - - Pectinesterase-2 precursor, putative [Ricinus communis]
16 Hb_000069_650 0.1769028133 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001377_370 0.1773690693 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
18 Hb_002965_060 0.178562667 - - Protein COBRA precursor, putative [Ricinus communis]
19 Hb_000656_320 0.1800766646 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
20 Hb_000261_340 0.1802917225 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003119_040 Hb_003119_040 Hb_000193_060 Hb_000193_060 Hb_003119_040--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_003119_040--Hb_006060_010 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_000395_120 Hb_000395_120 Hb_000193_060--Hb_000395_120 Hb_000878_120 Hb_000878_120 Hb_000193_060--Hb_000878_120 Hb_000193_060--Hb_006060_010 Hb_015037_010 Hb_015037_010 Hb_000193_060--Hb_015037_010 Hb_001377_370 Hb_001377_370 Hb_000193_060--Hb_001377_370 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_001430_010 Hb_001430_010 Hb_002048_100--Hb_001430_010 Hb_004970_070 Hb_004970_070 Hb_002048_100--Hb_004970_070 Hb_002133_010 Hb_002133_010 Hb_002048_100--Hb_002133_010 Hb_031266_020 Hb_031266_020 Hb_002048_100--Hb_031266_020 Hb_002048_100--Hb_015037_010 Hb_008250_020 Hb_008250_020 Hb_006153_010--Hb_008250_020 Hb_006153_010--Hb_000878_120 Hb_006153_010--Hb_000260_610 Hb_006153_010--Hb_000193_060 Hb_006153_010--Hb_015037_010 Hb_005599_010--Hb_004154_010 Hb_003226_060 Hb_003226_060 Hb_005599_010--Hb_003226_060 Hb_000397_170 Hb_000397_170 Hb_005599_010--Hb_000397_170 Hb_002540_100 Hb_002540_100 Hb_005599_010--Hb_002540_100 Hb_014549_010 Hb_014549_010 Hb_005599_010--Hb_014549_010 Hb_006197_010 Hb_006197_010 Hb_005599_010--Hb_006197_010 Hb_004154_010--Hb_014549_010 Hb_185830_090 Hb_185830_090 Hb_004154_010--Hb_185830_090 Hb_004154_010--Hb_003226_060 Hb_036602_010 Hb_036602_010 Hb_004154_010--Hb_036602_010 Hb_003050_170 Hb_003050_170 Hb_004154_010--Hb_003050_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.15435 104.558 371.112 261.557 4.0671 3.62468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86035 5.26655 5.60157 32.1354 3.3544

CAGE analysis