Hb_001377_370

Information

Type -
Description -
Location Contig1377: 365814-366497
Sequence    

Annotation

kegg
ID rcu:RCOM_0716950
description hypothetical protein
nr
ID XP_012083193.1
description PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
swissprot
ID Q9M160
description Uncharacterized protein At4g00950 OS=Arabidopsis thaliana GN=At4g00950 PE=2 SV=1
trembl
ID A0A067JX63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10435: 365793-367478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_370 0.0 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
2 Hb_000069_650 0.0897903966 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012150_040 0.0915475743 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001950_090 0.1055635438 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
5 Hb_000289_020 0.1122455116 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
6 Hb_002028_270 0.1145073945 - - Pectinesterase-1 precursor, putative [Ricinus communis]
7 Hb_000317_120 0.115821499 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
8 Hb_000933_040 0.1192938634 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_128392_010 0.1193041241 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
10 Hb_006810_040 0.1198960506 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_001565_090 0.1202284263 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
12 Hb_003847_060 0.1237314793 - - syntaxin, putative [Ricinus communis]
13 Hb_000856_390 0.1246768198 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007474_020 0.1256329265 - - multicopper oxidase, putative [Ricinus communis]
15 Hb_072201_010 0.1265720646 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
16 Hb_004884_170 0.1286658043 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
17 Hb_000878_120 0.1291818889 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
18 Hb_001971_040 0.1293443129 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
19 Hb_000862_050 0.1295408177 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
20 Hb_177195_010 0.1298386971 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]

Gene co-expression network

sample Hb_001377_370 Hb_001377_370 Hb_000069_650 Hb_000069_650 Hb_001377_370--Hb_000069_650 Hb_012150_040 Hb_012150_040 Hb_001377_370--Hb_012150_040 Hb_001950_090 Hb_001950_090 Hb_001377_370--Hb_001950_090 Hb_000289_020 Hb_000289_020 Hb_001377_370--Hb_000289_020 Hb_002028_270 Hb_002028_270 Hb_001377_370--Hb_002028_270 Hb_000317_120 Hb_000317_120 Hb_001377_370--Hb_000317_120 Hb_000069_650--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_000069_650--Hb_003847_060 Hb_001390_040 Hb_001390_040 Hb_000069_650--Hb_001390_040 Hb_072201_010 Hb_072201_010 Hb_000069_650--Hb_072201_010 Hb_001565_090 Hb_001565_090 Hb_000069_650--Hb_001565_090 Hb_012150_040--Hb_000317_120 Hb_101133_050 Hb_101133_050 Hb_012150_040--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_012150_040--Hb_000661_150 Hb_000742_180 Hb_000742_180 Hb_012150_040--Hb_000742_180 Hb_012150_040--Hb_072201_010 Hb_001950_090--Hb_003847_060 Hb_001699_270 Hb_001699_270 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_001950_090--Hb_000317_120 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100 Hb_006120_130 Hb_006120_130 Hb_000289_020--Hb_006120_130 Hb_000289_020--Hb_002028_270 Hb_000098_270 Hb_000098_270 Hb_000289_020--Hb_000098_270 Hb_005211_170 Hb_005211_170 Hb_000289_020--Hb_005211_170 Hb_043552_010 Hb_043552_010 Hb_000289_020--Hb_043552_010 Hb_003464_010 Hb_003464_010 Hb_000289_020--Hb_003464_010 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_000856_390 Hb_000856_390 Hb_000317_120--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_000317_120--Hb_016898_020 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.298762 1.13665 11.9052 10.1357 0.10905 0.0802586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0656897 0 0.93643 0.647707

CAGE analysis