Hb_001390_040

Information

Type -
Description -
Location Contig1390: 53769-56799
Sequence    

Annotation

kegg
ID rcu:RCOM_1381530
description hypothetical protein
nr
ID XP_012074533.1
description PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09882 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10689: 53651-54702 , PASA_asmbl_10691: 55638-56258 , PASA_asmbl_10692: 55638-56702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_040 0.0 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
2 Hb_001307_150 0.0803094876 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_000527_020 0.0848174995 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
4 Hb_000890_140 0.0911628789 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
5 Hb_000856_390 0.09377627 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003847_060 0.0940975914 - - syntaxin, putative [Ricinus communis]
7 Hb_007474_020 0.0950398786 - - multicopper oxidase, putative [Ricinus communis]
8 Hb_000069_650 0.0979990269 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000480_060 0.0984755072 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
10 Hb_005398_050 0.101171332 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
11 Hb_003368_070 0.1042561625 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
12 Hb_000038_070 0.1070292351 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001950_090 0.1080635779 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
14 Hb_118282_020 0.1083067066 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
15 Hb_080952_060 0.1107932221 - - PREDICTED: patellin-4 [Populus euphratica]
16 Hb_007245_030 0.1133649574 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000418_040 0.1150767698 - - hypothetical protein RCOM_0377590 [Ricinus communis]
18 Hb_001699_270 0.1154344333 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
19 Hb_001699_070 0.1163269477 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009113_060 0.1166151623 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001390_040 Hb_001390_040 Hb_001307_150 Hb_001307_150 Hb_001390_040--Hb_001307_150 Hb_000527_020 Hb_000527_020 Hb_001390_040--Hb_000527_020 Hb_000890_140 Hb_000890_140 Hb_001390_040--Hb_000890_140 Hb_000856_390 Hb_000856_390 Hb_001390_040--Hb_000856_390 Hb_003847_060 Hb_003847_060 Hb_001390_040--Hb_003847_060 Hb_007474_020 Hb_007474_020 Hb_001390_040--Hb_007474_020 Hb_001307_150--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_001307_150--Hb_000480_060 Hb_016898_020 Hb_016898_020 Hb_001307_150--Hb_016898_020 Hb_001699_270 Hb_001699_270 Hb_001307_150--Hb_001699_270 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_000527_020--Hb_000890_140 Hb_005398_050 Hb_005398_050 Hb_000527_020--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000527_020--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_000527_020--Hb_021576_050 Hb_006573_310 Hb_006573_310 Hb_000527_020--Hb_006573_310 Hb_003368_070 Hb_003368_070 Hb_000890_140--Hb_003368_070 Hb_001699_070 Hb_001699_070 Hb_000890_140--Hb_001699_070 Hb_000890_140--Hb_000856_390 Hb_007245_030 Hb_007245_030 Hb_000890_140--Hb_007245_030 Hb_034498_010 Hb_034498_010 Hb_000890_140--Hb_034498_010 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_000856_390--Hb_007245_030 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_003847_060--Hb_005398_050 Hb_001950_090 Hb_001950_090 Hb_003847_060--Hb_001950_090 Hb_003847_060--Hb_001699_270 Hb_003847_060--Hb_000856_390 Hb_003847_060--Hb_000480_060 Hb_101133_050 Hb_101133_050 Hb_007474_020--Hb_101133_050 Hb_007474_020--Hb_000856_390 Hb_007474_020--Hb_001307_150 Hb_000317_120 Hb_000317_120 Hb_007474_020--Hb_000317_120 Hb_118282_020 Hb_118282_020 Hb_007474_020--Hb_118282_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0173794 0.162027 5.52881 3.42754 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.108693 0 0.419621 0.164626

CAGE analysis