Hb_001699_270

Information

Type -
Description -
Location Contig1699: 282674-284228
Sequence    

Annotation

kegg
ID rcu:RCOM_0870960
description hypothetical protein
nr
ID XP_012065908.1
description PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LQD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15812: 272382-284279 , PASA_asmbl_15813: 282749-284279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_270 0.0 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
2 Hb_000661_150 0.0635261727 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
3 Hb_001307_150 0.0646758896 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_000480_060 0.0699850099 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
5 Hb_001950_090 0.0706999651 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
6 Hb_003847_060 0.0765759224 - - syntaxin, putative [Ricinus communis]
7 Hb_000345_450 0.07773099 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
8 Hb_006588_100 0.078011406 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016898_020 0.0942898932 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
10 Hb_000856_390 0.096862754 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005332_030 0.0988339579 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000317_120 0.1002687225 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
13 Hb_001688_100 0.1016313016 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
14 Hb_003656_080 0.1049653267 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
15 Hb_002686_320 0.1050594471 - - syntaxin, putative [Ricinus communis]
16 Hb_101133_050 0.1051894728 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
17 Hb_000701_020 0.1062770642 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
18 Hb_020301_020 0.1076731029 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_005276_090 0.1082736532 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_000418_040 0.1087168635 - - hypothetical protein RCOM_0377590 [Ricinus communis]

Gene co-expression network

sample Hb_001699_270 Hb_001699_270 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001307_150 Hb_001307_150 Hb_001699_270--Hb_001307_150 Hb_000480_060 Hb_000480_060 Hb_001699_270--Hb_000480_060 Hb_001950_090 Hb_001950_090 Hb_001699_270--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_001699_270--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001699_270--Hb_000345_450 Hb_101133_050 Hb_101133_050 Hb_000661_150--Hb_101133_050 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_000661_150--Hb_001307_150 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_001307_150--Hb_000480_060 Hb_016898_020 Hb_016898_020 Hb_001307_150--Hb_016898_020 Hb_001307_150--Hb_003847_060 Hb_001307_150--Hb_000345_450 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000480_060--Hb_000345_450 Hb_000085_360 Hb_000085_360 Hb_000480_060--Hb_000085_360 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_001950_090--Hb_006588_100 Hb_005398_050 Hb_005398_050 Hb_003847_060--Hb_005398_050 Hb_003847_060--Hb_000856_390 Hb_003847_060--Hb_000480_060 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_000345_450--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.313631 0.38905 25.9499 19.5073 0 0.0650522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0774348 0.0609132 0.227074 3.38935 1.38966

CAGE analysis