Hb_000661_150

Information

Type -
Description -
Location Contig661: 138604-140214
Sequence    

Annotation

kegg
ID rcu:RCOM_1578930
description ubiquitin-conjugating enzyme E2 C, putative (EC:6.3.2.19)
nr
ID XP_002513536.1
description ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
swissprot
ID Q8L7T3
description Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1
trembl
ID B9RIG7
description Ubiquitin-conjugating enzyme E2 C, putative OS=Ricinus communis GN=RCOM_1578930 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52973: 138609-140214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_150 0.0 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
2 Hb_001699_270 0.0635261727 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
3 Hb_101133_050 0.0904551893 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
4 Hb_001950_090 0.0914208134 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
5 Hb_001688_100 0.0949015109 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
6 Hb_000418_040 0.095654355 - - hypothetical protein RCOM_0377590 [Ricinus communis]
7 Hb_001307_150 0.0958247117 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_020301_020 0.0981358844 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_012150_040 0.0987700767 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000317_120 0.1005392037 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
11 Hb_001565_090 0.1033821083 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
12 Hb_007632_210 0.1034335689 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
13 Hb_003813_110 0.1048538291 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000069_650 0.1049148095 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000345_450 0.1078476634 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
16 Hb_000480_060 0.1100599651 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
17 Hb_005183_150 0.11015846 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
18 Hb_003847_060 0.1134425162 - - syntaxin, putative [Ricinus communis]
19 Hb_000856_390 0.1143519345 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002311_090 0.1145623773 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_150 Hb_000661_150 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_101133_050 Hb_101133_050 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_001307_150 Hb_001307_150 Hb_000661_150--Hb_001307_150 Hb_001699_270--Hb_001307_150 Hb_000480_060 Hb_000480_060 Hb_001699_270--Hb_000480_060 Hb_001699_270--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_001699_270--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001699_270--Hb_000345_450 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_000345_450 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100 Hb_001688_100--Hb_101133_050 Hb_080952_060 Hb_080952_060 Hb_001688_100--Hb_080952_060 Hb_001688_100--Hb_001307_150 Hb_001688_100--Hb_001699_270 Hb_001688_100--Hb_005276_090 Hb_118282_020 Hb_118282_020 Hb_000418_040--Hb_118282_020 Hb_004619_090 Hb_004619_090 Hb_000418_040--Hb_004619_090 Hb_059226_010 Hb_059226_010 Hb_000418_040--Hb_059226_010 Hb_001565_090 Hb_001565_090 Hb_000418_040--Hb_001565_090 Hb_000418_040--Hb_007474_020 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_001307_150--Hb_000480_060 Hb_001307_150--Hb_016898_020 Hb_001307_150--Hb_003847_060 Hb_001307_150--Hb_000345_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64711 2.57837 87.6346 63.3668 0.244195 0.300042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.755737 0.548601 2.00395 12.2795 4.45145

CAGE analysis