Hb_000069_650

Information

Type -
Description -
Location Contig69: 699742-700510
Sequence    

Annotation

kegg
ID rcu:RCOM_0149710
description hypothetical protein
nr
ID XP_002532657.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M373
description Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1
trembl
ID B9T338
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0149710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54285: 699733-700549
cDNA
(Sanger)
(ID:Location)		 025_B18.ab1: 699736-700445 , 027_A23.ab1: 699736-700444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_650 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001950_090 0.079455965 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
3 Hb_001377_370 0.0897903966 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
4 Hb_003847_060 0.0933246777 - - syntaxin, putative [Ricinus communis]
5 Hb_001390_040 0.0979990269 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
6 Hb_072201_010 0.1019569579 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
7 Hb_001565_090 0.1023375757 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
8 Hb_000661_150 0.1049148095 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
9 Hb_001307_150 0.1054340746 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000856_390 0.106852376 - - conserved hypothetical protein [Ricinus communis]
11 Hb_128392_010 0.1071676738 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
12 Hb_000317_120 0.1080031261 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
13 Hb_001699_270 0.1092518511 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
14 Hb_000390_010 0.1109462663 - - PREDICTED: protein CDI [Jatropha curcas]
15 Hb_012150_040 0.1125842758 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007474_020 0.1131402162 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_000527_020 0.1134034696 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
18 Hb_000890_140 0.1224447909 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
19 Hb_004531_060 0.1250566329 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
20 Hb_000418_040 0.125254863 - - hypothetical protein RCOM_0377590 [Ricinus communis]

Gene co-expression network

sample Hb_000069_650 Hb_000069_650 Hb_001950_090 Hb_001950_090 Hb_000069_650--Hb_001950_090 Hb_001377_370 Hb_001377_370 Hb_000069_650--Hb_001377_370 Hb_003847_060 Hb_003847_060 Hb_000069_650--Hb_003847_060 Hb_001390_040 Hb_001390_040 Hb_000069_650--Hb_001390_040 Hb_072201_010 Hb_072201_010 Hb_000069_650--Hb_072201_010 Hb_001565_090 Hb_001565_090 Hb_000069_650--Hb_001565_090 Hb_001950_090--Hb_003847_060 Hb_001699_270 Hb_001699_270 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100 Hb_012150_040 Hb_012150_040 Hb_001377_370--Hb_012150_040 Hb_001377_370--Hb_001950_090 Hb_000289_020 Hb_000289_020 Hb_001377_370--Hb_000289_020 Hb_002028_270 Hb_002028_270 Hb_001377_370--Hb_002028_270 Hb_001377_370--Hb_000317_120 Hb_005398_050 Hb_005398_050 Hb_003847_060--Hb_005398_050 Hb_001307_150 Hb_001307_150 Hb_003847_060--Hb_001307_150 Hb_003847_060--Hb_001699_270 Hb_000856_390 Hb_000856_390 Hb_003847_060--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_003847_060--Hb_000480_060 Hb_001390_040--Hb_001307_150 Hb_000527_020 Hb_000527_020 Hb_001390_040--Hb_000527_020 Hb_000890_140 Hb_000890_140 Hb_001390_040--Hb_000890_140 Hb_001390_040--Hb_000856_390 Hb_001390_040--Hb_003847_060 Hb_007474_020 Hb_007474_020 Hb_001390_040--Hb_007474_020 Hb_072201_010--Hb_012150_040 Hb_072201_010--Hb_003847_060 Hb_072201_010--Hb_001950_090 Hb_021576_050 Hb_021576_050 Hb_072201_010--Hb_021576_050 Hb_072201_010--Hb_000317_120 Hb_000661_150 Hb_000661_150 Hb_001565_090--Hb_000661_150 Hb_000418_040 Hb_000418_040 Hb_001565_090--Hb_000418_040 Hb_001565_090--Hb_007474_020 Hb_001565_090--Hb_001377_370 Hb_001565_090--Hb_001390_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98462 9.91236 148.077 114.745 0.215451 0.30851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.658093 1.34425 0.175602 16.0164 3.1011

CAGE analysis