Hb_003226_060

Information

Type -
Description -
Location Contig3226: 55230-56550
Sequence    

Annotation

kegg
ID rcu:RCOM_1179060
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_002523112.1
description Pectinesterase-2 precursor, putative [Ricinus communis]
swissprot
ID Q9SRX4
description Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1
trembl
ID B9SAU3
description Pectinesterase OS=Ricinus communis GN=RCOM_1179060 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_060 0.0 - - Pectinesterase-2 precursor, putative [Ricinus communis]
2 Hb_000397_170 0.0231964845 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005599_010 0.0815614539 - - Protein MLO, putative [Ricinus communis]
4 Hb_001754_100 0.1024153102 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
5 Hb_004154_010 0.1092003502 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
6 Hb_000574_180 0.1115413733 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
7 Hb_150745_010 0.1174464795 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
8 Hb_000256_170 0.1264454775 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
9 Hb_000483_050 0.130181696 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
10 Hb_000413_220 0.1415436314 - - PREDICTED: kinesin-1 [Jatropha curcas]
11 Hb_025163_020 0.1420566979 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
12 Hb_000261_340 0.1424333134 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
13 Hb_002540_100 0.1518098729 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
14 Hb_000656_120 0.1572969895 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
15 Hb_008215_020 0.1577911952 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_185830_090 0.1579618562 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001005_170 0.1584818433 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000574_270 0.1592904037 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
19 Hb_000365_110 0.1624098518 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
20 Hb_003050_170 0.1658897692 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003226_060 Hb_003226_060 Hb_000397_170 Hb_000397_170 Hb_003226_060--Hb_000397_170 Hb_005599_010 Hb_005599_010 Hb_003226_060--Hb_005599_010 Hb_001754_100 Hb_001754_100 Hb_003226_060--Hb_001754_100 Hb_004154_010 Hb_004154_010 Hb_003226_060--Hb_004154_010 Hb_000574_180 Hb_000574_180 Hb_003226_060--Hb_000574_180 Hb_150745_010 Hb_150745_010 Hb_003226_060--Hb_150745_010 Hb_000397_170--Hb_001754_100 Hb_000397_170--Hb_005599_010 Hb_000397_170--Hb_000574_180 Hb_000397_170--Hb_150745_010 Hb_000256_170 Hb_000256_170 Hb_000397_170--Hb_000256_170 Hb_005599_010--Hb_004154_010 Hb_002540_100 Hb_002540_100 Hb_005599_010--Hb_002540_100 Hb_014549_010 Hb_014549_010 Hb_005599_010--Hb_014549_010 Hb_006197_010 Hb_006197_010 Hb_005599_010--Hb_006197_010 Hb_001754_100--Hb_150745_010 Hb_001754_100--Hb_000574_180 Hb_000413_220 Hb_000413_220 Hb_001754_100--Hb_000413_220 Hb_001754_100--Hb_000256_170 Hb_004154_010--Hb_014549_010 Hb_185830_090 Hb_185830_090 Hb_004154_010--Hb_185830_090 Hb_036602_010 Hb_036602_010 Hb_004154_010--Hb_036602_010 Hb_003050_170 Hb_003050_170 Hb_004154_010--Hb_003050_170 Hb_000574_180--Hb_000413_220 Hb_000574_180--Hb_000256_170 Hb_000739_250 Hb_000739_250 Hb_000574_180--Hb_000739_250 Hb_000668_190 Hb_000668_190 Hb_000574_180--Hb_000668_190 Hb_150745_010--Hb_000413_220 Hb_150745_010--Hb_000574_180 Hb_000483_050 Hb_000483_050 Hb_150745_010--Hb_000483_050 Hb_000574_270 Hb_000574_270 Hb_150745_010--Hb_000574_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117533 0.55223 0.251823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0762419 0

CAGE analysis