Hb_000483_050

Information

Type -
Description -
Location Contig483: 47983-49821
Sequence    

Annotation

kegg
ID rcu:RCOM_0340710
description amino acid transporter, putative
nr
ID XP_012084707.1
description PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID A0A067JTC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19851 PE=4 SV=1
Gene Ontology
ID GO:0005774
description vacuolar amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44801: 47985-49935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_050 0.0 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
2 Hb_000365_110 0.0885427107 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
3 Hb_000574_270 0.0966459725 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
4 Hb_001971_030 0.1055186862 - - PREDICTED: exonuclease 1 [Jatropha curcas]
5 Hb_000656_120 0.1077542321 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
6 Hb_150745_010 0.1122151679 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
7 Hb_000953_180 0.1219745626 - - -
8 Hb_008948_070 0.124870863 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
9 Hb_003226_060 0.130181696 - - Pectinesterase-2 precursor, putative [Ricinus communis]
10 Hb_007101_250 0.1344129533 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
11 Hb_000397_170 0.1434143782 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000771_040 0.14470291 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
13 Hb_006478_140 0.1458205381 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
14 Hb_096974_010 0.1561803735 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
15 Hb_008115_030 0.1568944729 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
16 Hb_100395_010 0.1584864599 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_001581_040 0.15901235 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_000192_030 0.1643266445 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
19 Hb_005599_010 0.1652514101 - - Protein MLO, putative [Ricinus communis]
20 Hb_000574_180 0.1659942894 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_050 Hb_000483_050 Hb_000365_110 Hb_000365_110 Hb_000483_050--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000483_050--Hb_000574_270 Hb_001971_030 Hb_001971_030 Hb_000483_050--Hb_001971_030 Hb_000656_120 Hb_000656_120 Hb_000483_050--Hb_000656_120 Hb_150745_010 Hb_150745_010 Hb_000483_050--Hb_150745_010 Hb_000953_180 Hb_000953_180 Hb_000483_050--Hb_000953_180 Hb_000365_110--Hb_000953_180 Hb_000365_110--Hb_000574_270 Hb_100395_010 Hb_100395_010 Hb_000365_110--Hb_100395_010 Hb_000192_030 Hb_000192_030 Hb_000365_110--Hb_000192_030 Hb_008948_070 Hb_008948_070 Hb_000365_110--Hb_008948_070 Hb_000574_270--Hb_000953_180 Hb_000574_270--Hb_150745_010 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_000771_040 Hb_000771_040 Hb_001971_030--Hb_000771_040 Hb_002973_070 Hb_002973_070 Hb_001971_030--Hb_002973_070 Hb_001971_030--Hb_008948_070 Hb_002774_180 Hb_002774_180 Hb_001971_030--Hb_002774_180 Hb_008725_030 Hb_008725_030 Hb_001971_030--Hb_008725_030 Hb_000656_120--Hb_150745_010 Hb_002045_260 Hb_002045_260 Hb_000656_120--Hb_002045_260 Hb_011849_030 Hb_011849_030 Hb_000656_120--Hb_011849_030 Hb_001159_220 Hb_001159_220 Hb_000656_120--Hb_001159_220 Hb_001005_170 Hb_001005_170 Hb_000656_120--Hb_001005_170 Hb_001754_100 Hb_001754_100 Hb_150745_010--Hb_001754_100 Hb_150745_010--Hb_000413_220 Hb_000574_180 Hb_000574_180 Hb_150745_010--Hb_000574_180 Hb_000397_170 Hb_000397_170 Hb_150745_010--Hb_000397_170 Hb_000953_180--Hb_000192_030 Hb_000953_180--Hb_100395_010 Hb_000953_180--Hb_008948_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.012757 34.0038 93.9152 27.1966 0 0.012649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0860645 13.5336 0.431343

CAGE analysis