Hb_100395_010

Information

Type -
Description -
Location Contig100395: 1157-3783
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00275: 1138-3918 , PASA_asmbl_00276: 1906-2918 , PASA_asmbl_00277: 2445-2702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100395_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000192_030 0.058545562 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
3 Hb_000953_180 0.0816347195 - - -
4 Hb_021142_030 0.0858404005 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_000365_110 0.0944130289 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
6 Hb_009385_010 0.0953428361 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
7 Hb_001410_040 0.0984307447 - - Protein ABIL2, putative [Ricinus communis]
8 Hb_007747_070 0.0993994276 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
9 Hb_007894_040 0.1032783324 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
10 Hb_006083_010 0.1086835006 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
11 Hb_012400_020 0.1089082445 - - Spotted leaf protein, putative [Ricinus communis]
12 Hb_008948_070 0.1119625757 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
13 Hb_004788_030 0.1125343449 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_012146_010 0.1146860051 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
15 Hb_046610_010 0.1157439694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004297_050 0.1167200213 - - cytochrome P450, putative [Ricinus communis]
17 Hb_008821_030 0.1173249305 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
18 Hb_003847_090 0.1177114602 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
19 Hb_096974_010 0.1194103547 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
20 Hb_000592_070 0.1203309202 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]

Gene co-expression network

sample Hb_100395_010 Hb_100395_010 Hb_000192_030 Hb_000192_030 Hb_100395_010--Hb_000192_030 Hb_000953_180 Hb_000953_180 Hb_100395_010--Hb_000953_180 Hb_021142_030 Hb_021142_030 Hb_100395_010--Hb_021142_030 Hb_000365_110 Hb_000365_110 Hb_100395_010--Hb_000365_110 Hb_009385_010 Hb_009385_010 Hb_100395_010--Hb_009385_010 Hb_001410_040 Hb_001410_040 Hb_100395_010--Hb_001410_040 Hb_000192_030--Hb_000953_180 Hb_010223_010 Hb_010223_010 Hb_000192_030--Hb_010223_010 Hb_000192_030--Hb_000365_110 Hb_008948_070 Hb_008948_070 Hb_000192_030--Hb_008948_070 Hb_107174_010 Hb_107174_010 Hb_000192_030--Hb_107174_010 Hb_000953_180--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000953_180--Hb_000574_270 Hb_000953_180--Hb_008948_070 Hb_000483_050 Hb_000483_050 Hb_000953_180--Hb_000483_050 Hb_021142_030--Hb_009385_010 Hb_007747_070 Hb_007747_070 Hb_021142_030--Hb_007747_070 Hb_021142_030--Hb_001410_040 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_004788_030 Hb_004788_030 Hb_021142_030--Hb_004788_030 Hb_008821_030 Hb_008821_030 Hb_021142_030--Hb_008821_030 Hb_000365_110--Hb_000574_270 Hb_000365_110--Hb_000483_050 Hb_000365_110--Hb_008948_070 Hb_009385_010--Hb_001410_040 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010 Hb_001410_040--Hb_004788_030 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_006083_010 Hb_001410_040--Hb_007747_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.78414 9.50889 3.40366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.238312 0

CAGE analysis