Hb_008948_070

Information

Type -
Description -
Location Contig8948: 83382-91228
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13110g
description POPTRDRAFT_578949; hypothetical protein
nr
ID XP_012078794.1
description PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q41142
description Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1
trembl
ID A0A067K8H9
description Phospholipase D OS=Jatropha curcas GN=JCGZ_13337 PE=3 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d alpha 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_070 0.0 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
2 Hb_001846_030 0.0811930283 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
3 Hb_000953_180 0.0923832435 - - -
4 Hb_000192_030 0.1018659968 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
5 Hb_096974_010 0.1088659446 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
6 Hb_006478_140 0.1100276707 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
7 Hb_000365_110 0.1104941339 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
8 Hb_100395_010 0.1119625757 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001971_030 0.1202587659 - - PREDICTED: exonuclease 1 [Jatropha curcas]
10 Hb_000483_050 0.124870863 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
11 Hb_017693_040 0.1302404859 - - tyrosine kinase family protein [Medicago truncatula]
12 Hb_004297_050 0.1320069281 - - cytochrome P450, putative [Ricinus communis]
13 Hb_012022_020 0.1339365027 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
14 Hb_008725_030 0.1393387096 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000574_270 0.1401048597 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
16 Hb_043522_010 0.1451274991 - - -
17 Hb_032071_010 0.147340857 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
18 Hb_008115_030 0.1497936732 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
19 Hb_000592_070 0.1617982841 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
20 Hb_160653_010 0.1629640106 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_070 Hb_008948_070 Hb_001846_030 Hb_001846_030 Hb_008948_070--Hb_001846_030 Hb_000953_180 Hb_000953_180 Hb_008948_070--Hb_000953_180 Hb_000192_030 Hb_000192_030 Hb_008948_070--Hb_000192_030 Hb_096974_010 Hb_096974_010 Hb_008948_070--Hb_096974_010 Hb_006478_140 Hb_006478_140 Hb_008948_070--Hb_006478_140 Hb_000365_110 Hb_000365_110 Hb_008948_070--Hb_000365_110 Hb_032071_010 Hb_032071_010 Hb_001846_030--Hb_032071_010 Hb_001846_030--Hb_006478_140 Hb_012022_020 Hb_012022_020 Hb_001846_030--Hb_012022_020 Hb_017693_040 Hb_017693_040 Hb_001846_030--Hb_017693_040 Hb_001846_030--Hb_000192_030 Hb_000953_180--Hb_000192_030 Hb_000953_180--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000953_180--Hb_000574_270 Hb_100395_010 Hb_100395_010 Hb_000953_180--Hb_100395_010 Hb_000483_050 Hb_000483_050 Hb_000953_180--Hb_000483_050 Hb_000192_030--Hb_100395_010 Hb_010223_010 Hb_010223_010 Hb_000192_030--Hb_010223_010 Hb_000192_030--Hb_000365_110 Hb_107174_010 Hb_107174_010 Hb_000192_030--Hb_107174_010 Hb_004297_050 Hb_004297_050 Hb_096974_010--Hb_004297_050 Hb_008725_030 Hb_008725_030 Hb_096974_010--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_096974_010--Hb_003968_010 Hb_096974_010--Hb_100395_010 Hb_001971_030 Hb_001971_030 Hb_096974_010--Hb_001971_030 Hb_000604_080 Hb_000604_080 Hb_006478_140--Hb_000604_080 Hb_006478_140--Hb_000953_180 Hb_127372_010 Hb_127372_010 Hb_006478_140--Hb_127372_010 Hb_011622_010 Hb_011622_010 Hb_006478_140--Hb_011622_010 Hb_000365_110--Hb_000574_270 Hb_000365_110--Hb_000483_050 Hb_000365_110--Hb_100395_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0341374 0.0517355 0.0160988 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00543777 0

CAGE analysis