Hb_006478_140

Information

Type -
Description -
Location Contig6478: 110820-112929
Sequence    

Annotation

kegg
ID rcu:RCOM_0646490
description nucleolar protein nop56, putative
nr
ID XP_012092200.1
description PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
swissprot
ID Q9SPL5
description Vicilin-like antimicrobial peptides 2-1 OS=Macadamia integrifolia GN=AMP2-1 PE=2 SV=1
trembl
ID A0A067JF64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21894 PE=4 SV=1
Gene Ontology
ID GO:0045735
description vicilin-like antimicrobial peptides 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52407: 110695-112912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_140 0.0 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
2 Hb_000604_080 0.0870354801 - - Fgenesh protein [Medicago truncatula]
3 Hb_008948_070 0.1100276707 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
4 Hb_001846_030 0.1117275208 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
5 Hb_000953_180 0.1238708957 - - -
6 Hb_127372_010 0.1407337357 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
7 Hb_011622_010 0.1440763562 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
8 Hb_000483_050 0.1458205381 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
9 Hb_000574_270 0.1497416565 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
10 Hb_000365_110 0.1528273669 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
11 Hb_000192_030 0.1528740003 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
12 Hb_017693_040 0.1681311246 - - tyrosine kinase family protein [Medicago truncatula]
13 Hb_001971_030 0.1701855865 - - PREDICTED: exonuclease 1 [Jatropha curcas]
14 Hb_008115_030 0.1708202189 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
15 Hb_001361_010 0.172495195 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_002374_360 0.1726556674 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
17 Hb_000862_060 0.1757503321 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000340_070 0.1785157173 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
19 Hb_012022_020 0.1802545169 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
20 Hb_002874_210 0.1817927791 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006478_140 Hb_006478_140 Hb_000604_080 Hb_000604_080 Hb_006478_140--Hb_000604_080 Hb_008948_070 Hb_008948_070 Hb_006478_140--Hb_008948_070 Hb_001846_030 Hb_001846_030 Hb_006478_140--Hb_001846_030 Hb_000953_180 Hb_000953_180 Hb_006478_140--Hb_000953_180 Hb_127372_010 Hb_127372_010 Hb_006478_140--Hb_127372_010 Hb_011622_010 Hb_011622_010 Hb_006478_140--Hb_011622_010 Hb_000340_070 Hb_000340_070 Hb_000604_080--Hb_000340_070 Hb_000604_080--Hb_127372_010 Hb_038601_010 Hb_038601_010 Hb_000604_080--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_000604_080--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_000604_080--Hb_004725_040 Hb_008948_070--Hb_001846_030 Hb_008948_070--Hb_000953_180 Hb_000192_030 Hb_000192_030 Hb_008948_070--Hb_000192_030 Hb_096974_010 Hb_096974_010 Hb_008948_070--Hb_096974_010 Hb_000365_110 Hb_000365_110 Hb_008948_070--Hb_000365_110 Hb_032071_010 Hb_032071_010 Hb_001846_030--Hb_032071_010 Hb_012022_020 Hb_012022_020 Hb_001846_030--Hb_012022_020 Hb_017693_040 Hb_017693_040 Hb_001846_030--Hb_017693_040 Hb_001846_030--Hb_000192_030 Hb_000953_180--Hb_000192_030 Hb_000953_180--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000953_180--Hb_000574_270 Hb_100395_010 Hb_100395_010 Hb_000953_180--Hb_100395_010 Hb_000483_050 Hb_000483_050 Hb_000953_180--Hb_000483_050 Hb_001361_010 Hb_001361_010 Hb_127372_010--Hb_001361_010 Hb_027065_010 Hb_027065_010 Hb_127372_010--Hb_027065_010 Hb_116420_050 Hb_116420_050 Hb_127372_010--Hb_116420_050 Hb_127372_010--Hb_000953_180 Hb_003207_220 Hb_003207_220 Hb_127372_010--Hb_003207_220 Hb_007163_080 Hb_007163_080 Hb_011622_010--Hb_007163_080 Hb_005375_060 Hb_005375_060 Hb_011622_010--Hb_005375_060 Hb_011622_010--Hb_000604_080 Hb_104641_010 Hb_104641_010 Hb_011622_010--Hb_104641_010 Hb_002374_360 Hb_002374_360 Hb_011622_010--Hb_002374_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0386136 0.0684244 0.0094463 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00924693 0

CAGE analysis