Hb_027065_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig27065: 5980-7327
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14560g
description POPTRDRAFT_834662; hypothetical protein
nr
ID XP_011048479.1
description PREDICTED: myb-related protein Myb4-like [Populus euphratica]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID B9I6H8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14560g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28380: 6438-6871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027065_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
2 Hb_116420_050 0.094988587 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
3 Hb_127372_010 0.1037068359 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
4 Hb_001361_010 0.1262523116 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
5 Hb_003207_220 0.1317728853 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
6 Hb_000866_430 0.1349950689 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
7 Hb_000042_020 0.1361413682 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_007919_070 0.1373487721 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
9 Hb_000280_100 0.1406702668 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
10 Hb_000251_170 0.14959721 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
11 Hb_155896_010 0.1586034148 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
12 Hb_002435_010 0.1608280776 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
13 Hb_002999_150 0.1619293118 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_107174_010 0.1714081535 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001143_200 0.175577824 transcription factor TF Family: NAC NAC domain protein [Glycine max]
16 Hb_104641_010 0.1770869134 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_052764_120 0.1783667539 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
18 Hb_003787_050 0.1791605113 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004551_010 0.1796343684 - - tryptophan synthase beta chain, putative [Ricinus communis]
20 Hb_005599_020 0.180230123 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_027065_010 Hb_027065_010 Hb_116420_050 Hb_116420_050 Hb_027065_010--Hb_116420_050 Hb_127372_010 Hb_127372_010 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_003207_220 Hb_003207_220 Hb_027065_010--Hb_003207_220 Hb_000866_430 Hb_000866_430 Hb_027065_010--Hb_000866_430 Hb_000042_020 Hb_000042_020 Hb_027065_010--Hb_000042_020 Hb_116420_050--Hb_127372_010 Hb_116420_050--Hb_003207_220 Hb_116420_050--Hb_000042_020 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_116420_050--Hb_000866_430 Hb_127372_010--Hb_001361_010 Hb_000953_180 Hb_000953_180 Hb_127372_010--Hb_000953_180 Hb_127372_010--Hb_003207_220 Hb_000604_080 Hb_000604_080 Hb_127372_010--Hb_000604_080 Hb_104641_010 Hb_104641_010 Hb_001361_010--Hb_104641_010 Hb_074672_010 Hb_074672_010 Hb_001361_010--Hb_074672_010 Hb_086614_010 Hb_086614_010 Hb_001361_010--Hb_086614_010 Hb_001361_010--Hb_116420_050 Hb_002999_150 Hb_002999_150 Hb_003207_220--Hb_002999_150 Hb_052764_120 Hb_052764_120 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_002267_010 Hb_002267_010 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_000866_430--Hb_007919_070 Hb_000251_170 Hb_000251_170 Hb_000866_430--Hb_000251_170 Hb_001007_090 Hb_001007_090 Hb_000866_430--Hb_001007_090 Hb_155896_010 Hb_155896_010 Hb_000866_430--Hb_155896_010 Hb_001143_200 Hb_001143_200 Hb_000042_020--Hb_001143_200 Hb_000280_100 Hb_000280_100 Hb_000042_020--Hb_000280_100 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_000042_020--Hb_127372_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.79315 24.3082 1.60733 0 0.0356881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.338555 0.0532408 0 0.344827 0.747932

CAGE analysis