Hb_000042_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig42: 37214-38569
Sequence    

Annotation

kegg
ID rcu:RCOM_0202190
description NAC domain-containing protein, putative
nr
ID XP_002533913.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q93VY3
description NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
trembl
ID B9T6P4
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0202190 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41452: 37245-38697
cDNA
(Sanger)
(ID:Location)		 034_P17.ab1: 37278-38163

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_020 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_001143_200 0.0884574335 transcription factor TF Family: NAC NAC domain protein [Glycine max]
3 Hb_000280_100 0.1196191962 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
4 Hb_116420_050 0.129609294 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
5 Hb_027065_010 0.1361413682 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
6 Hb_007101_250 0.1534181437 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
7 Hb_127372_010 0.1565309635 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
8 Hb_007919_070 0.1580518004 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
9 Hb_004650_040 0.1669474878 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
10 Hb_000340_070 0.1680581094 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
11 Hb_002435_010 0.1683136253 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
12 Hb_005695_070 0.1706347704 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_003935_050 0.1707465387 - - protein with unknown function [Ricinus communis]
14 Hb_008878_010 0.1724400224 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
15 Hb_001007_090 0.1750517644 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
16 Hb_001022_020 0.1758728767 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
17 Hb_000069_250 0.1827282732 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
18 Hb_001396_040 0.1833129665 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
19 Hb_004551_010 0.184198402 - - tryptophan synthase beta chain, putative [Ricinus communis]
20 Hb_000866_430 0.1844634532 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_020 Hb_000042_020 Hb_001143_200 Hb_001143_200 Hb_000042_020--Hb_001143_200 Hb_000280_100 Hb_000280_100 Hb_000042_020--Hb_000280_100 Hb_116420_050 Hb_116420_050 Hb_000042_020--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000042_020--Hb_027065_010 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_127372_010 Hb_127372_010 Hb_000042_020--Hb_127372_010 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001040_050 Hb_001040_050 Hb_001143_200--Hb_001040_050 Hb_007441_290 Hb_007441_290 Hb_001143_200--Hb_007441_290 Hb_000388_040 Hb_000388_040 Hb_001143_200--Hb_000388_040 Hb_012633_010 Hb_012633_010 Hb_000280_100--Hb_012633_010 Hb_002435_010 Hb_002435_010 Hb_000280_100--Hb_002435_010 Hb_000280_100--Hb_003935_050 Hb_000280_100--Hb_027065_010 Hb_116420_050--Hb_027065_010 Hb_116420_050--Hb_127372_010 Hb_003207_220 Hb_003207_220 Hb_116420_050--Hb_003207_220 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_000866_430 Hb_000866_430 Hb_116420_050--Hb_000866_430 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_027065_010--Hb_003207_220 Hb_027065_010--Hb_000866_430 Hb_000574_270 Hb_000574_270 Hb_007101_250--Hb_000574_270 Hb_000483_050 Hb_000483_050 Hb_007101_250--Hb_000483_050 Hb_000365_110 Hb_000365_110 Hb_007101_250--Hb_000365_110 Hb_150745_010 Hb_150745_010 Hb_007101_250--Hb_150745_010 Hb_000142_030 Hb_000142_030 Hb_007101_250--Hb_000142_030 Hb_008878_010 Hb_008878_010 Hb_007101_250--Hb_008878_010 Hb_127372_010--Hb_001361_010 Hb_000953_180 Hb_000953_180 Hb_127372_010--Hb_000953_180 Hb_127372_010--Hb_003207_220 Hb_000604_080 Hb_000604_080 Hb_127372_010--Hb_000604_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269694 39.9968 173.792 12.0637 0.15451 0.180419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.711696 3.58944 0.611763 7.54936 6.39673

CAGE analysis