Hb_007919_070

Information

Type -
Description -
Location Contig7919: 50851-51414
Sequence    

Annotation

kegg
ID pop:POPTR_0005s28110g
description POPTRDRAFT_1080059; hypothetical protein
nr
ID XP_002307832.1
description hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
swissprot
ID Q9SRE6
description Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1
trembl
ID B9H5Z3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28110g PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein cml19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58376: 51571-51937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_070 0.0 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
2 Hb_000251_170 0.087763623 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
3 Hb_014700_020 0.0996202686 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_000866_430 0.1187509911 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
5 Hb_003935_050 0.1239045235 - - protein with unknown function [Ricinus communis]
6 Hb_116420_050 0.1307519422 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
7 Hb_000349_170 0.1354708306 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
8 Hb_009421_090 0.1362115473 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
9 Hb_027065_010 0.1373487721 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
10 Hb_005695_070 0.1404586691 - - Cysteine-rich RLK 29 [Theobroma cacao]
11 Hb_000140_250 0.1412981919 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
12 Hb_163140_010 0.1414935723 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
13 Hb_001143_200 0.1415499153 transcription factor TF Family: NAC NAC domain protein [Glycine max]
14 Hb_000280_100 0.1441760701 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
15 Hb_000856_230 0.1472439702 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
16 Hb_004551_010 0.1485790137 - - tryptophan synthase beta chain, putative [Ricinus communis]
17 Hb_003207_220 0.1526087901 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
18 Hb_155896_010 0.1533894247 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
19 Hb_003767_030 0.1557271868 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
20 Hb_000134_260 0.1562869104 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007919_070 Hb_007919_070 Hb_000251_170 Hb_000251_170 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_003935_050 Hb_003935_050 Hb_007919_070--Hb_003935_050 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_000349_170 Hb_000349_170 Hb_007919_070--Hb_000349_170 Hb_000251_170--Hb_014700_020 Hb_002999_150 Hb_002999_150 Hb_000251_170--Hb_002999_150 Hb_155896_010 Hb_155896_010 Hb_000251_170--Hb_155896_010 Hb_003207_220 Hb_003207_220 Hb_000251_170--Hb_003207_220 Hb_009421_090 Hb_009421_090 Hb_000251_170--Hb_009421_090 Hb_014700_020--Hb_009421_090 Hb_000856_230 Hb_000856_230 Hb_014700_020--Hb_000856_230 Hb_115962_010 Hb_115962_010 Hb_014700_020--Hb_115962_010 Hb_000371_030 Hb_000371_030 Hb_014700_020--Hb_000371_030 Hb_027065_010 Hb_027065_010 Hb_000866_430--Hb_027065_010 Hb_000866_430--Hb_116420_050 Hb_000866_430--Hb_000251_170 Hb_001007_090 Hb_001007_090 Hb_000866_430--Hb_001007_090 Hb_000866_430--Hb_155896_010 Hb_001143_200 Hb_001143_200 Hb_003935_050--Hb_001143_200 Hb_005695_070 Hb_005695_070 Hb_003935_050--Hb_005695_070 Hb_163140_010 Hb_163140_010 Hb_003935_050--Hb_163140_010 Hb_000280_100 Hb_000280_100 Hb_003935_050--Hb_000280_100 Hb_028187_010 Hb_028187_010 Hb_003935_050--Hb_028187_010 Hb_116420_050--Hb_027065_010 Hb_127372_010 Hb_127372_010 Hb_116420_050--Hb_127372_010 Hb_116420_050--Hb_003207_220 Hb_000042_020 Hb_000042_020 Hb_116420_050--Hb_000042_020 Hb_149985_030 Hb_149985_030 Hb_000349_170--Hb_149985_030 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_000349_170--Hb_000388_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.922166 125.81 438.879 63.6666 2.41708 0.760831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.776087 0.958347 0.301819 1.39895 26.5281

CAGE analysis