Hb_155896_010

Information

Type -
Description -
Location Contig155896: 2-982
Sequence    

Annotation

kegg
ID rcu:RCOM_1598420
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012073772.1
description PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
swissprot
ID Q9SYQ8
description Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3
trembl
ID A0A067KPG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08194 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor protein kinase clavata1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155896_010 0.0 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
2 Hb_000251_170 0.1297408023 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
3 Hb_000069_530 0.1331682522 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
4 Hb_005381_010 0.1332743109 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
5 Hb_006615_060 0.1399725913 - - conserved hypothetical protein [Ricinus communis]
6 Hb_077694_010 0.1419413005 - - uncharacterized protein LOC100305624 [Glycine max]
7 Hb_127372_010 0.1422210167 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
8 Hb_004551_010 0.1445442282 - - tryptophan synthase beta chain, putative [Ricinus communis]
9 Hb_001660_080 0.1453173957 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
10 Hb_012400_020 0.1485626754 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_000256_180 0.1490318959 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
12 Hb_001361_010 0.1524690563 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_009252_090 0.152597023 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_007919_070 0.1533894247 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
15 Hb_000592_070 0.1561770518 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
16 Hb_010223_010 0.1575386973 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
17 Hb_086614_010 0.1581602712 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
18 Hb_000035_140 0.1583480081 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
19 Hb_000866_430 0.1585620799 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
20 Hb_027065_010 0.1586034148 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]

Gene co-expression network

sample Hb_155896_010 Hb_155896_010 Hb_000251_170 Hb_000251_170 Hb_155896_010--Hb_000251_170 Hb_000069_530 Hb_000069_530 Hb_155896_010--Hb_000069_530 Hb_005381_010 Hb_005381_010 Hb_155896_010--Hb_005381_010 Hb_006615_060 Hb_006615_060 Hb_155896_010--Hb_006615_060 Hb_077694_010 Hb_077694_010 Hb_155896_010--Hb_077694_010 Hb_127372_010 Hb_127372_010 Hb_155896_010--Hb_127372_010 Hb_014700_020 Hb_014700_020 Hb_000251_170--Hb_014700_020 Hb_007919_070 Hb_007919_070 Hb_000251_170--Hb_007919_070 Hb_002999_150 Hb_002999_150 Hb_000251_170--Hb_002999_150 Hb_003207_220 Hb_003207_220 Hb_000251_170--Hb_003207_220 Hb_009421_090 Hb_009421_090 Hb_000251_170--Hb_009421_090 Hb_000069_530--Hb_005381_010 Hb_003060_150 Hb_003060_150 Hb_000069_530--Hb_003060_150 Hb_121540_010 Hb_121540_010 Hb_000069_530--Hb_121540_010 Hb_000069_530--Hb_077694_010 Hb_000592_070 Hb_000592_070 Hb_000069_530--Hb_000592_070 Hb_001660_080 Hb_001660_080 Hb_000069_530--Hb_001660_080 Hb_005381_010--Hb_121540_010 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_005381_010--Hb_001660_080 Hb_005381_010--Hb_077694_010 Hb_164146_020 Hb_164146_020 Hb_006615_060--Hb_164146_020 Hb_001153_250 Hb_001153_250 Hb_006615_060--Hb_001153_250 Hb_006615_060--Hb_005381_010 Hb_074672_010 Hb_074672_010 Hb_006615_060--Hb_074672_010 Hb_006615_060--Hb_077694_010 Hb_120011_010 Hb_120011_010 Hb_006615_060--Hb_120011_010 Hb_077694_010--Hb_121540_010 Hb_017693_040 Hb_017693_040 Hb_077694_010--Hb_017693_040 Hb_077694_010--Hb_001660_080 Hb_077694_010--Hb_120011_010 Hb_001361_010 Hb_001361_010 Hb_127372_010--Hb_001361_010 Hb_027065_010 Hb_027065_010 Hb_127372_010--Hb_027065_010 Hb_116420_050 Hb_116420_050 Hb_127372_010--Hb_116420_050 Hb_000953_180 Hb_000953_180 Hb_127372_010--Hb_000953_180 Hb_127372_010--Hb_003207_220 Hb_000604_080 Hb_000604_080 Hb_127372_010--Hb_000604_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.888867 1.59737 0.281119 0 0.0399228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0164241 0.083395

CAGE analysis