Hb_014700_020

Information

Type -
Description -
Location Contig14700: 12263-25680
Sequence    

Annotation

kegg
ID rcu:RCOM_0905390
description tryptophan synthase beta chain, putative (EC:1.3.1.74)
nr
ID XP_002518519.1
description tryptophan synthase beta chain, putative [Ricinus communis]
swissprot
ID O50046
description Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1
trembl
ID B9RXQ0
description Tryptophan synthase beta chain, putative OS=Ricinus communis GN=RCOM_0905390 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase beta chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11917: 12417-12541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014700_020 0.0 - - tryptophan synthase beta chain, putative [Ricinus communis]
2 Hb_009421_090 0.0654632272 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
3 Hb_000251_170 0.0723973692 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
4 Hb_000856_230 0.094933673 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
5 Hb_007919_070 0.0996202686 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
6 Hb_115962_010 0.1286888792 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_000371_030 0.1291110205 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
8 Hb_009252_090 0.1313643277 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_071654_010 0.1347104744 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
10 Hb_012146_010 0.1361304499 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
11 Hb_055877_010 0.1372232569 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_005695_070 0.1374103734 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_163140_010 0.1405812899 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
14 Hb_007894_040 0.1406143904 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
15 Hb_028187_010 0.1412205301 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
16 Hb_003935_050 0.1431844212 - - protein with unknown function [Ricinus communis]
17 Hb_000059_030 0.1433892523 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
18 Hb_003767_030 0.1439685845 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
19 Hb_000200_270 0.1469484986 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
20 Hb_007747_070 0.1472474918 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_014700_020 Hb_014700_020 Hb_009421_090 Hb_009421_090 Hb_014700_020--Hb_009421_090 Hb_000251_170 Hb_000251_170 Hb_014700_020--Hb_000251_170 Hb_000856_230 Hb_000856_230 Hb_014700_020--Hb_000856_230 Hb_007919_070 Hb_007919_070 Hb_014700_020--Hb_007919_070 Hb_115962_010 Hb_115962_010 Hb_014700_020--Hb_115962_010 Hb_000371_030 Hb_000371_030 Hb_014700_020--Hb_000371_030 Hb_009421_090--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_009421_090--Hb_000200_270 Hb_009421_090--Hb_115962_010 Hb_003767_030 Hb_003767_030 Hb_009421_090--Hb_003767_030 Hb_003207_210 Hb_003207_210 Hb_009421_090--Hb_003207_210 Hb_000251_170--Hb_007919_070 Hb_002999_150 Hb_002999_150 Hb_000251_170--Hb_002999_150 Hb_155896_010 Hb_155896_010 Hb_000251_170--Hb_155896_010 Hb_003207_220 Hb_003207_220 Hb_000251_170--Hb_003207_220 Hb_000251_170--Hb_009421_090 Hb_000856_230--Hb_000200_270 Hb_002540_100 Hb_002540_100 Hb_000856_230--Hb_002540_100 Hb_004316_020 Hb_004316_020 Hb_000856_230--Hb_004316_020 Hb_000856_230--Hb_000371_030 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_003935_050 Hb_003935_050 Hb_007919_070--Hb_003935_050 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_000349_170 Hb_000349_170 Hb_007919_070--Hb_000349_170 Hb_000438_200 Hb_000438_200 Hb_115962_010--Hb_000438_200 Hb_000049_030 Hb_000049_030 Hb_115962_010--Hb_000049_030 Hb_000035_140 Hb_000035_140 Hb_115962_010--Hb_000035_140 Hb_012496_020 Hb_012496_020 Hb_115962_010--Hb_012496_020 Hb_001025_140 Hb_001025_140 Hb_115962_010--Hb_001025_140 Hb_008821_030 Hb_008821_030 Hb_000371_030--Hb_008821_030 Hb_001117_020 Hb_001117_020 Hb_000371_030--Hb_001117_020 Hb_004788_030 Hb_004788_030 Hb_000371_030--Hb_004788_030 Hb_019429_020 Hb_019429_020 Hb_000371_030--Hb_019429_020 Hb_000371_030--Hb_002540_100 Hb_003847_090 Hb_003847_090 Hb_000371_030--Hb_003847_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.31891 8.33459 2.00099 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0177414 0.442311

CAGE analysis