Hb_003935_050

Information

Type -
Description -
Location Contig3935: 48623-54299
Sequence    

Annotation

kegg
ID rcu:RCOM_1054970
description protein with unknown function
nr
ID XP_002533685.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LXC0
description Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1
trembl
ID B9T616
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1054970 PE=4 SV=1
Gene Ontology
ID GO:0048046
description guanosine nucleotide diphosphate dissociation inhibitor at5g09550-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_050 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001143_200 0.1187008266 transcription factor TF Family: NAC NAC domain protein [Glycine max]
3 Hb_005695_070 0.1199444563 - - Cysteine-rich RLK 29 [Theobroma cacao]
4 Hb_163140_010 0.1205498466 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
5 Hb_007919_070 0.1239045235 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
6 Hb_000280_100 0.1244349653 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
7 Hb_028187_010 0.1263126229 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
8 Hb_149985_030 0.1266124149 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
9 Hb_006519_020 0.128394773 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_022406_010 0.1312533022 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000349_170 0.1330221494 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
12 Hb_012633_010 0.1351782809 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
13 Hb_169753_010 0.1358693236 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
14 Hb_000388_040 0.1375817626 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
15 Hb_007441_290 0.1419902418 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
16 Hb_014700_020 0.1431844212 - - tryptophan synthase beta chain, putative [Ricinus communis]
17 Hb_009421_090 0.1431872526 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
18 Hb_000200_270 0.1443942758 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
19 Hb_001606_040 0.1462908794 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
20 Hb_103339_010 0.1465545421 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_003935_050 Hb_003935_050 Hb_001143_200 Hb_001143_200 Hb_003935_050--Hb_001143_200 Hb_005695_070 Hb_005695_070 Hb_003935_050--Hb_005695_070 Hb_163140_010 Hb_163140_010 Hb_003935_050--Hb_163140_010 Hb_007919_070 Hb_007919_070 Hb_003935_050--Hb_007919_070 Hb_000280_100 Hb_000280_100 Hb_003935_050--Hb_000280_100 Hb_028187_010 Hb_028187_010 Hb_003935_050--Hb_028187_010 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_001143_200--Hb_000280_100 Hb_001040_050 Hb_001040_050 Hb_001143_200--Hb_001040_050 Hb_007441_290 Hb_007441_290 Hb_001143_200--Hb_007441_290 Hb_000388_040 Hb_000388_040 Hb_001143_200--Hb_000388_040 Hb_149985_030 Hb_149985_030 Hb_005695_070--Hb_149985_030 Hb_001001_010 Hb_001001_010 Hb_005695_070--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_005695_070--Hb_000349_170 Hb_010267_020 Hb_010267_020 Hb_005695_070--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_005695_070--Hb_000200_270 Hb_022406_010 Hb_022406_010 Hb_005695_070--Hb_022406_010 Hb_007681_020 Hb_007681_020 Hb_163140_010--Hb_007681_020 Hb_163140_010--Hb_028187_010 Hb_163140_010--Hb_149985_030 Hb_012633_010 Hb_012633_010 Hb_163140_010--Hb_012633_010 Hb_006519_020 Hb_006519_020 Hb_163140_010--Hb_006519_020 Hb_163140_010--Hb_000349_170 Hb_000251_170 Hb_000251_170 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_007919_070--Hb_000349_170 Hb_000280_100--Hb_012633_010 Hb_000280_100--Hb_000042_020 Hb_002435_010 Hb_002435_010 Hb_000280_100--Hb_002435_010 Hb_027065_010 Hb_027065_010 Hb_000280_100--Hb_027065_010 Hb_000157_060 Hb_000157_060 Hb_028187_010--Hb_000157_060 Hb_002447_060 Hb_002447_060 Hb_028187_010--Hb_002447_060 Hb_028187_010--Hb_006519_020 Hb_001153_230 Hb_001153_230 Hb_028187_010--Hb_001153_230 Hb_000527_030 Hb_000527_030 Hb_028187_010--Hb_000527_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.515255 3.3839 0.490909 0.0292155 0.0273781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0559389 0.174736

CAGE analysis