Hb_007681_020

Information

Type -
Description -
Location Contig7681: 27046-29351
Sequence    

Annotation

kegg
ID rcu:RCOM_1312160
description transferase, putative (EC:2.4.1.12)
nr
ID XP_002518853.1
description transferase, putative [Ricinus communis]
swissprot
ID Q0WVN5
description Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2
trembl
ID B9RYN4
description Transferase, putative OS=Ricinus communis GN=RCOM_1312160 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein g3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007681_020 0.0 - - transferase, putative [Ricinus communis]
2 Hb_163140_010 0.0773634733 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
3 Hb_000051_150 0.0895714507 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
4 Hb_006519_020 0.0935470707 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_001377_340 0.0983045896 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
6 Hb_001153_230 0.1016794467 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
7 Hb_088118_010 0.1061027028 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_052530_010 0.1079626261 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
9 Hb_001606_040 0.1084984743 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
10 Hb_000527_030 0.1106116623 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
11 Hb_022406_010 0.1134958735 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_002079_100 0.1157389319 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
13 Hb_000816_080 0.1163626743 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
14 Hb_004003_020 0.1174630828 - - unnamed protein product [Coffea canephora]
15 Hb_028187_010 0.1189274344 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
16 Hb_004007_080 0.120326534 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
17 Hb_002447_060 0.1207756995 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
18 Hb_078954_020 0.1243664208 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
19 Hb_000809_220 0.1244861907 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
20 Hb_001123_340 0.126342941 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007681_020 Hb_007681_020 Hb_163140_010 Hb_163140_010 Hb_007681_020--Hb_163140_010 Hb_000051_150 Hb_000051_150 Hb_007681_020--Hb_000051_150 Hb_006519_020 Hb_006519_020 Hb_007681_020--Hb_006519_020 Hb_001377_340 Hb_001377_340 Hb_007681_020--Hb_001377_340 Hb_001153_230 Hb_001153_230 Hb_007681_020--Hb_001153_230 Hb_088118_010 Hb_088118_010 Hb_007681_020--Hb_088118_010 Hb_028187_010 Hb_028187_010 Hb_163140_010--Hb_028187_010 Hb_149985_030 Hb_149985_030 Hb_163140_010--Hb_149985_030 Hb_012633_010 Hb_012633_010 Hb_163140_010--Hb_012633_010 Hb_163140_010--Hb_006519_020 Hb_000349_170 Hb_000349_170 Hb_163140_010--Hb_000349_170 Hb_002121_030 Hb_002121_030 Hb_000051_150--Hb_002121_030 Hb_000809_220 Hb_000809_220 Hb_000051_150--Hb_000809_220 Hb_005365_040 Hb_005365_040 Hb_000051_150--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000051_150--Hb_104014_010 Hb_010422_020 Hb_010422_020 Hb_000051_150--Hb_010422_020 Hb_001369_590 Hb_001369_590 Hb_000051_150--Hb_001369_590 Hb_022406_010 Hb_022406_010 Hb_006519_020--Hb_022406_010 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_001606_040 Hb_001606_040 Hb_006519_020--Hb_001606_040 Hb_001040_050 Hb_001040_050 Hb_006519_020--Hb_001040_050 Hb_169753_010 Hb_169753_010 Hb_006519_020--Hb_169753_010 Hb_004003_020 Hb_004003_020 Hb_001377_340--Hb_004003_020 Hb_052530_010 Hb_052530_010 Hb_001377_340--Hb_052530_010 Hb_001377_340--Hb_006519_020 Hb_000445_320 Hb_000445_320 Hb_001377_340--Hb_000445_320 Hb_000527_030 Hb_000527_030 Hb_001377_340--Hb_000527_030 Hb_074660_010 Hb_074660_010 Hb_001153_230--Hb_074660_010 Hb_001153_230--Hb_000527_030 Hb_001153_230--Hb_028187_010 Hb_000816_080 Hb_000816_080 Hb_001153_230--Hb_000816_080 Hb_001153_230--Hb_052530_010 Hb_089736_010 Hb_089736_010 Hb_088118_010--Hb_089736_010 Hb_088118_010--Hb_000816_080 Hb_054615_010 Hb_054615_010 Hb_088118_010--Hb_054615_010 Hb_001926_010 Hb_001926_010 Hb_088118_010--Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_088118_010--Hb_001921_040 Hb_088118_010--Hb_004007_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.997116 13.8892 2.18221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.41101

CAGE analysis