Hb_001606_040

Information

Type -
Description -
Location Contig1606: 88142-90712
Sequence    

Annotation

kegg
ID rcu:RCOM_0549620
description Rho GDP-dissociation inhibitor, putative
nr
ID XP_002532283.1
description Rho GDP-dissociation inhibitor, putative [Ricinus communis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID B9T214
description Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_0549620 PE=4 SV=1
Gene Ontology
ID GO:0005737
description rho gdp-dissociation inhibitor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14375: 87781-91172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001606_040 0.0 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
2 Hb_022406_010 0.0663360711 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_006519_020 0.090065683 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_149985_030 0.0949314896 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
5 Hb_003077_010 0.0955230039 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_012084_010 0.0984535519 - - cold regulated protein [Manihot esculenta]
7 Hb_088118_010 0.1004380879 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_007681_020 0.1084984743 - - transferase, putative [Ricinus communis]
9 Hb_089736_010 0.1114959384 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
10 Hb_104014_010 0.11464504 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
11 Hb_054615_010 0.1178419152 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
12 Hb_000349_170 0.1186515921 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
13 Hb_001123_340 0.1216791582 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
14 Hb_001218_060 0.1226334449 - - conserved hypothetical protein [Ricinus communis]
15 Hb_103709_010 0.1260103896 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_000152_650 0.1271831743 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_002918_170 0.128455109 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
18 Hb_000051_150 0.1293011806 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
19 Hb_163140_010 0.1308067594 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
20 Hb_000816_080 0.1312334811 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001606_040 Hb_001606_040 Hb_022406_010 Hb_022406_010 Hb_001606_040--Hb_022406_010 Hb_006519_020 Hb_006519_020 Hb_001606_040--Hb_006519_020 Hb_149985_030 Hb_149985_030 Hb_001606_040--Hb_149985_030 Hb_003077_010 Hb_003077_010 Hb_001606_040--Hb_003077_010 Hb_012084_010 Hb_012084_010 Hb_001606_040--Hb_012084_010 Hb_088118_010 Hb_088118_010 Hb_001606_040--Hb_088118_010 Hb_022406_010--Hb_149985_030 Hb_022406_010--Hb_006519_020 Hb_022406_010--Hb_012084_010 Hb_169753_010 Hb_169753_010 Hb_022406_010--Hb_169753_010 Hb_005695_070 Hb_005695_070 Hb_022406_010--Hb_005695_070 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_001040_050 Hb_001040_050 Hb_006519_020--Hb_001040_050 Hb_007681_020 Hb_007681_020 Hb_006519_020--Hb_007681_020 Hb_006519_020--Hb_169753_010 Hb_000349_170 Hb_000349_170 Hb_149985_030--Hb_000349_170 Hb_149985_030--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_149985_030--Hb_001913_070 Hb_103709_010 Hb_103709_010 Hb_149985_030--Hb_103709_010 Hb_001123_340 Hb_001123_340 Hb_003077_010--Hb_001123_340 Hb_104014_010 Hb_104014_010 Hb_003077_010--Hb_104014_010 Hb_089736_010 Hb_089736_010 Hb_003077_010--Hb_089736_010 Hb_001218_060 Hb_001218_060 Hb_003077_010--Hb_001218_060 Hb_002121_030 Hb_002121_030 Hb_003077_010--Hb_002121_030 Hb_012084_010--Hb_103709_010 Hb_003964_050 Hb_003964_050 Hb_012084_010--Hb_003964_050 Hb_012084_010--Hb_001218_060 Hb_005839_080 Hb_005839_080 Hb_012084_010--Hb_005839_080 Hb_088118_010--Hb_089736_010 Hb_000816_080 Hb_000816_080 Hb_088118_010--Hb_000816_080 Hb_054615_010 Hb_054615_010 Hb_088118_010--Hb_054615_010 Hb_001926_010 Hb_001926_010 Hb_088118_010--Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_088118_010--Hb_001921_040 Hb_088118_010--Hb_004007_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.936476 12.6227 1.62502 0 0.0391643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0569319 0 0.253966 1.59123

CAGE analysis