Hb_012084_010

Information

Type -
Description -
Location Contig12084: 8875-17036
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00790g
description POPTRDRAFT_1080124; hypothetical protein
nr
ID AGC51782.1
description cold regulated protein [Manihot esculenta]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID V9M4U8
description Cold regulated protein OS=Manihot esculenta GN=COR78 PE=2 SV=1
Gene Ontology
ID GO:0046872
description heavy metal transport detoxification superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06430: 16111-16914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012084_010 0.0 - - cold regulated protein [Manihot esculenta]
2 Hb_103709_010 0.0607293559 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_001606_040 0.0984535519 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
4 Hb_022406_010 0.1018234715 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_003964_050 0.1054234383 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
6 Hb_001218_060 0.1054921524 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005839_080 0.1096098933 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
8 Hb_008059_040 0.1122682178 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
9 Hb_149985_030 0.1128963611 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
10 Hb_003077_010 0.1186031248 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_078954_020 0.1288070886 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
12 Hb_012633_010 0.1301168945 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
13 Hb_000282_010 0.1317971469 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002918_170 0.1373698653 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
15 Hb_006519_020 0.1376927987 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_005511_080 0.146073026 - - Protein MLO, putative [Ricinus communis]
17 Hb_000349_170 0.1470458725 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
18 Hb_001123_340 0.1470730828 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
19 Hb_088118_010 0.1501771586 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_104014_010 0.1510136751 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012084_010 Hb_012084_010 Hb_103709_010 Hb_103709_010 Hb_012084_010--Hb_103709_010 Hb_001606_040 Hb_001606_040 Hb_012084_010--Hb_001606_040 Hb_022406_010 Hb_022406_010 Hb_012084_010--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_012084_010--Hb_003964_050 Hb_001218_060 Hb_001218_060 Hb_012084_010--Hb_001218_060 Hb_005839_080 Hb_005839_080 Hb_012084_010--Hb_005839_080 Hb_149985_030 Hb_149985_030 Hb_103709_010--Hb_149985_030 Hb_008059_040 Hb_008059_040 Hb_103709_010--Hb_008059_040 Hb_103709_010--Hb_022406_010 Hb_103709_010--Hb_001218_060 Hb_103709_010--Hb_001606_040 Hb_001606_040--Hb_022406_010 Hb_006519_020 Hb_006519_020 Hb_001606_040--Hb_006519_020 Hb_001606_040--Hb_149985_030 Hb_003077_010 Hb_003077_010 Hb_001606_040--Hb_003077_010 Hb_088118_010 Hb_088118_010 Hb_001606_040--Hb_088118_010 Hb_022406_010--Hb_149985_030 Hb_022406_010--Hb_006519_020 Hb_169753_010 Hb_169753_010 Hb_022406_010--Hb_169753_010 Hb_005695_070 Hb_005695_070 Hb_022406_010--Hb_005695_070 Hb_003964_050--Hb_008059_040 Hb_012633_010 Hb_012633_010 Hb_003964_050--Hb_012633_010 Hb_003964_050--Hb_005839_080 Hb_078954_020 Hb_078954_020 Hb_003964_050--Hb_078954_020 Hb_003964_050--Hb_103709_010 Hb_000282_010 Hb_000282_010 Hb_001218_060--Hb_000282_010 Hb_001123_340 Hb_001123_340 Hb_001218_060--Hb_001123_340 Hb_001218_060--Hb_078954_020 Hb_005511_080 Hb_005511_080 Hb_001218_060--Hb_005511_080 Hb_001218_060--Hb_003077_010 Hb_007632_200 Hb_007632_200 Hb_005839_080--Hb_007632_200 Hb_000152_580 Hb_000152_580 Hb_005839_080--Hb_000152_580 Hb_005839_080--Hb_022406_010 Hb_005839_080--Hb_088118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.2139 83.0949 4.92529 0.12988 0.249205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.25536 10.2067

CAGE analysis