Hb_007632_200

Information

Type -
Description -
Location Contig7632: 175149-182327
Sequence    

Annotation

kegg
ID egr:104450421
description vegetative cell wall protein gp1-like
nr
ID XP_010088449.1
description hypothetical protein L484_018221 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9QMX7
description Uncharacterized protein OS=Morus notabilis GN=L484_018221 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57368: 182281-182600
cDNA
(Sanger)
(ID:Location)		 018_D22.ab1: 175203-175942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_200 0.0 - - hypothetical protein L484_018221 [Morus notabilis]
2 Hb_001040_050 0.112720323 - - Stem-specific protein TSJT1, putative [Ricinus communis]
3 Hb_005839_080 0.1154160221 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
4 Hb_004650_040 0.135447558 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
5 Hb_012633_010 0.1379796483 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
6 Hb_006519_020 0.1399928115 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_001102_030 0.1437825631 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_007441_290 0.1468430775 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
9 Hb_010672_040 0.147952157 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_000347_160 0.1520834525 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
11 Hb_000984_230 0.15386378 - - -
12 Hb_002079_100 0.1547637147 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
13 Hb_002447_060 0.1585020987 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
14 Hb_022406_010 0.1589516551 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_010288_050 0.1592700477 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
16 Hb_001433_120 0.159290549 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
17 Hb_001143_200 0.1608018242 transcription factor TF Family: NAC NAC domain protein [Glycine max]
18 Hb_002693_040 0.1613368647 - - hypersensitive-induced response protein [Carica papaya]
19 Hb_169753_010 0.1624579263 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
20 Hb_002205_160 0.1636904717 - - chalcone isomerase [Hibiscus cannabinus]

Gene co-expression network

sample Hb_007632_200 Hb_007632_200 Hb_001040_050 Hb_001040_050 Hb_007632_200--Hb_001040_050 Hb_005839_080 Hb_005839_080 Hb_007632_200--Hb_005839_080 Hb_004650_040 Hb_004650_040 Hb_007632_200--Hb_004650_040 Hb_012633_010 Hb_012633_010 Hb_007632_200--Hb_012633_010 Hb_006519_020 Hb_006519_020 Hb_007632_200--Hb_006519_020 Hb_001102_030 Hb_001102_030 Hb_007632_200--Hb_001102_030 Hb_002447_060 Hb_002447_060 Hb_001040_050--Hb_002447_060 Hb_000115_190 Hb_000115_190 Hb_001040_050--Hb_000115_190 Hb_001040_050--Hb_006519_020 Hb_002079_100 Hb_002079_100 Hb_001040_050--Hb_002079_100 Hb_001040_050--Hb_012633_010 Hb_000347_160 Hb_000347_160 Hb_001040_050--Hb_000347_160 Hb_012084_010 Hb_012084_010 Hb_005839_080--Hb_012084_010 Hb_000152_580 Hb_000152_580 Hb_005839_080--Hb_000152_580 Hb_022406_010 Hb_022406_010 Hb_005839_080--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_005839_080--Hb_003964_050 Hb_088118_010 Hb_088118_010 Hb_005839_080--Hb_088118_010 Hb_007441_290 Hb_007441_290 Hb_004650_040--Hb_007441_290 Hb_002205_160 Hb_002205_160 Hb_004650_040--Hb_002205_160 Hb_169753_010 Hb_169753_010 Hb_004650_040--Hb_169753_010 Hb_001143_200 Hb_001143_200 Hb_004650_040--Hb_001143_200 Hb_004650_040--Hb_022406_010 Hb_012633_010--Hb_002447_060 Hb_012633_010--Hb_002079_100 Hb_012633_010--Hb_006519_020 Hb_000505_030 Hb_000505_030 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010 Hb_006519_020--Hb_022406_010 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_001606_040 Hb_001606_040 Hb_006519_020--Hb_001606_040 Hb_007681_020 Hb_007681_020 Hb_006519_020--Hb_007681_020 Hb_006519_020--Hb_169753_010 Hb_007558_060 Hb_007558_060 Hb_001102_030--Hb_007558_060 Hb_000984_230 Hb_000984_230 Hb_001102_030--Hb_000984_230 Hb_008642_020 Hb_008642_020 Hb_001102_030--Hb_008642_020 Hb_005170_050 Hb_005170_050 Hb_001102_030--Hb_005170_050 Hb_000175_110 Hb_000175_110 Hb_001102_030--Hb_000175_110 Hb_001519_080 Hb_001519_080 Hb_001102_030--Hb_001519_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.232773 5.77925 0.463963 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0399726 0.0314434 0 0.302232 0.195356

CAGE analysis