Hb_000984_230

Information

Type -
Description -
Location Contig984: 266178-268697
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_G21r.ab1: 268622-269170 , 023_D08r.ab1: 268622-269159

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_230 0.0 - - -
2 Hb_001102_030 0.0888792956 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_006788_130 0.1032075971 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
4 Hb_000084_230 0.1080115245 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
5 Hb_005170_050 0.1083729539 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
6 Hb_001235_040 0.1084735174 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
7 Hb_008642_020 0.1098845936 - - sterol desaturase, putative [Ricinus communis]
8 Hb_017959_020 0.111015038 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
9 Hb_011218_020 0.112466305 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007558_060 0.1140750202 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
11 Hb_001519_080 0.1145820698 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_001564_100 0.1150681292 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
13 Hb_000175_110 0.1155867658 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
14 Hb_006485_020 0.1214994487 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
15 Hb_000155_280 0.1224284281 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
16 Hb_028995_020 0.1233519552 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
17 Hb_000563_110 0.1255236514 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
18 Hb_032223_010 0.1258440263 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_002376_020 0.1275353925 - - lectin, partial [Lathyrus palustris]
20 Hb_002026_040 0.1300076935 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_230 Hb_000984_230 Hb_001102_030 Hb_001102_030 Hb_000984_230--Hb_001102_030 Hb_006788_130 Hb_006788_130 Hb_000984_230--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_000984_230--Hb_000084_230 Hb_005170_050 Hb_005170_050 Hb_000984_230--Hb_005170_050 Hb_001235_040 Hb_001235_040 Hb_000984_230--Hb_001235_040 Hb_008642_020 Hb_008642_020 Hb_000984_230--Hb_008642_020 Hb_007558_060 Hb_007558_060 Hb_001102_030--Hb_007558_060 Hb_001102_030--Hb_008642_020 Hb_001102_030--Hb_005170_050 Hb_000175_110 Hb_000175_110 Hb_001102_030--Hb_000175_110 Hb_001519_080 Hb_001519_080 Hb_001102_030--Hb_001519_080 Hb_006788_130--Hb_000084_230 Hb_001564_100 Hb_001564_100 Hb_006788_130--Hb_001564_100 Hb_006788_130--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_006788_130--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210 Hb_000084_230--Hb_001564_100 Hb_000084_230--Hb_001235_040 Hb_000084_230--Hb_004174_030 Hb_000084_230--Hb_001220_020 Hb_028995_020 Hb_028995_020 Hb_000084_230--Hb_028995_020 Hb_002376_020 Hb_002376_020 Hb_005170_050--Hb_002376_020 Hb_005170_050--Hb_008642_020 Hb_006485_020 Hb_006485_020 Hb_005170_050--Hb_006485_020 Hb_005550_060 Hb_005550_060 Hb_005170_050--Hb_005550_060 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_000005_390 Hb_000005_390 Hb_005170_050--Hb_000005_390 Hb_011063_030 Hb_011063_030 Hb_001235_040--Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_001235_040--Hb_162378_020 Hb_001235_040--Hb_001220_020 Hb_001235_040--Hb_001564_100 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000005_390 Hb_000563_110 Hb_000563_110 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005550_060 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.138223 0.127101 52.2411 6.37089 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329519 0 0 1.19074 0.824131

CAGE analysis