Hb_001102_030

Information

Type -
Description -
Location Contig1102: 37331-38138
Sequence    

Annotation

kegg
ID rcu:RCOM_1182890
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002528491.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q94G86
description Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea GN=OLE9 PE=1 SV=1
trembl
ID B9SR72
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1182890 PE=4 SV=1
Gene Ontology
ID GO:0004673
description glucan endo- -beta-d-glucosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03128: 37348-38177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_030 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_007558_060 0.0868850603 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
3 Hb_000984_230 0.0888792956 - - -
4 Hb_008642_020 0.0961173395 - - sterol desaturase, putative [Ricinus communis]
5 Hb_005170_050 0.1058220925 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
6 Hb_000175_110 0.1067691211 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
7 Hb_001519_080 0.11009714 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_000152_580 0.1115416153 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
9 Hb_004881_040 0.1121194375 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
10 Hb_000563_110 0.113232744 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
11 Hb_001677_070 0.1137470182 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
12 Hb_005550_060 0.1181228971 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
13 Hb_000544_150 0.1189630349 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
14 Hb_000005_390 0.1210019079 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
15 Hb_000190_200 0.1253350016 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
16 Hb_002376_020 0.1275620759 - - lectin, partial [Lathyrus palustris]
17 Hb_011218_020 0.1294804261 - - conserved hypothetical protein [Ricinus communis]
18 Hb_017959_020 0.1319786652 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
19 Hb_001652_090 0.1320010296 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002045_020 0.1328868363 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]

Gene co-expression network

sample Hb_001102_030 Hb_001102_030 Hb_007558_060 Hb_007558_060 Hb_001102_030--Hb_007558_060 Hb_000984_230 Hb_000984_230 Hb_001102_030--Hb_000984_230 Hb_008642_020 Hb_008642_020 Hb_001102_030--Hb_008642_020 Hb_005170_050 Hb_005170_050 Hb_001102_030--Hb_005170_050 Hb_000175_110 Hb_000175_110 Hb_001102_030--Hb_000175_110 Hb_001519_080 Hb_001519_080 Hb_001102_030--Hb_001519_080 Hb_007558_060--Hb_008642_020 Hb_000563_110 Hb_000563_110 Hb_007558_060--Hb_000563_110 Hb_007558_060--Hb_001519_080 Hb_000005_390 Hb_000005_390 Hb_007558_060--Hb_000005_390 Hb_007558_060--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_007558_060--Hb_005550_060 Hb_006788_130 Hb_006788_130 Hb_000984_230--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_000984_230--Hb_000084_230 Hb_000984_230--Hb_005170_050 Hb_001235_040 Hb_001235_040 Hb_000984_230--Hb_001235_040 Hb_000984_230--Hb_008642_020 Hb_008642_020--Hb_000005_390 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005550_060 Hb_008642_020--Hb_005170_050 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_002376_020 Hb_002376_020 Hb_005170_050--Hb_002376_020 Hb_006485_020 Hb_006485_020 Hb_005170_050--Hb_006485_020 Hb_005170_050--Hb_005550_060 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_005170_050--Hb_000005_390 Hb_000175_110--Hb_000563_110 Hb_028995_020 Hb_028995_020 Hb_000175_110--Hb_028995_020 Hb_001677_070 Hb_001677_070 Hb_000175_110--Hb_001677_070 Hb_011218_020 Hb_011218_020 Hb_000175_110--Hb_011218_020 Hb_012368_040 Hb_012368_040 Hb_000175_110--Hb_012368_040 Hb_001652_090 Hb_001652_090 Hb_000175_110--Hb_001652_090 Hb_001519_080--Hb_008642_020 Hb_001519_080--Hb_005170_050 Hb_001519_080--Hb_005550_060 Hb_001519_080--Hb_000005_390 Hb_000505_030 Hb_000505_030 Hb_001519_080--Hb_000505_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225014 0.261166 123.731 10.5438 0.0529106 0.100949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.103404 0 3.13457 4.26401

CAGE analysis